miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 5' -48.1 NC_003266.2 + 8866 0.66 0.943424
Target:  5'- -cAGCCgCGUcuGGAACGAGGCGg--GCa -3'
miRNA:   3'- cuUUGGgGCG--UUUUGCUUCGUacaCG- -5'
11865 5' -48.1 NC_003266.2 + 4708 0.66 0.943424
Target:  5'- --cGCCCCGCAGGugGA--CAUGa-- -3'
miRNA:   3'- cuuUGGGGCGUUUugCUucGUACacg -5'
11865 5' -48.1 NC_003266.2 + 21953 0.66 0.937953
Target:  5'- --cGCCCUGCAAcuGACgcgGAAGC-UGUGg -3'
miRNA:   3'- cuuUGGGGCGUU--UUG---CUUCGuACACg -5'
11865 5' -48.1 NC_003266.2 + 1708 0.66 0.937953
Target:  5'- aGAGACUCCGUucGAGGCGuucucuAGCAgcUGCc -3'
miRNA:   3'- -CUUUGGGGCG--UUUUGCu-----UCGUacACG- -5'
11865 5' -48.1 NC_003266.2 + 10868 0.67 0.912783
Target:  5'- --uACCgCCGCGgccgccguGAGCGggGCcgG-GCa -3'
miRNA:   3'- cuuUGG-GGCGU--------UUUGCuuCGuaCaCG- -5'
11865 5' -48.1 NC_003266.2 + 26555 0.67 0.898234
Target:  5'- cGGGCCaauuaCGCGGAuugaggugauuGCGggGCGUG-GCg -3'
miRNA:   3'- cUUUGGg----GCGUUU-----------UGCuuCGUACaCG- -5'
11865 5' -48.1 NC_003266.2 + 7484 0.67 0.890479
Target:  5'- aGGGCCCagucgGCGAGAUGggGguUG-GCg -3'
miRNA:   3'- cUUUGGGg----CGUUUUGCuuCguACaCG- -5'
11865 5' -48.1 NC_003266.2 + 23484 0.67 0.881587
Target:  5'- -uGACgCCCGCGGAGCacgaggaGGAGCuugcaGUGCg -3'
miRNA:   3'- cuUUG-GGGCGUUUUG-------CUUCGua---CACG- -5'
11865 5' -48.1 NC_003266.2 + 15399 0.68 0.874036
Target:  5'- aGGGCCuuGUAGAcguaGggGCAgGUGCg -3'
miRNA:   3'- cUUUGGggCGUUUug--CuuCGUaCACG- -5'
11865 5' -48.1 NC_003266.2 + 16123 0.68 0.865363
Target:  5'- aGAAAuCCCCGCAAAAUcAAGCggGUc- -3'
miRNA:   3'- -CUUU-GGGGCGUUUUGcUUCGuaCAcg -5'
11865 5' -48.1 NC_003266.2 + 34234 0.69 0.837648
Target:  5'- cGAGACCgUCGCc-GACGA-GCgGUGUGCa -3'
miRNA:   3'- -CUUUGG-GGCGuuUUGCUuCG-UACACG- -5'
11865 5' -48.1 NC_003266.2 + 5103 0.69 0.837648
Target:  5'- ----aCCCGCGAAACGAGGagGUcUGCu -3'
miRNA:   3'- cuuugGGGCGUUUUGCUUCg-UAcACG- -5'
11865 5' -48.1 NC_003266.2 + 25849 0.69 0.8249
Target:  5'- ---cCCCCGCAAgcuugcaagcaggaGACGAuGGCGuuuuUGUGCc -3'
miRNA:   3'- cuuuGGGGCGUU--------------UUGCU-UCGU----ACACG- -5'
11865 5' -48.1 NC_003266.2 + 10643 0.69 0.817865
Target:  5'- cGAAUUCCGCGGcuAACGAgGGCGUG-GCu -3'
miRNA:   3'- cUUUGGGGCGUU--UUGCU-UCGUACaCG- -5'
11865 5' -48.1 NC_003266.2 + 22281 0.7 0.760115
Target:  5'- aAGACCCCGCAGGACuugcuagaaaacuGGuugguagcgcacccGGCGUcGUGCa -3'
miRNA:   3'- cUUUGGGGCGUUUUG-------------CU--------------UCGUA-CACG- -5'
11865 5' -48.1 NC_003266.2 + 25710 0.71 0.718944
Target:  5'- cGGGACCCCGaccCGGAGCGGagauGGUAUccGUGCu -3'
miRNA:   3'- -CUUUGGGGC---GUUUUGCU----UCGUA--CACG- -5'
11865 5' -48.1 NC_003266.2 + 23083 1.12 0.001844
Target:  5'- aGAAACCCCGCAAAACGAAGCAUGUGCc -3'
miRNA:   3'- -CUUUGGGGCGUUUUGCUUCGUACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.