miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11868 3' -58 NC_003266.2 + 3316 0.66 0.393082
Target:  5'- gUCCUCCGucacAUCCacacaCACGGGCuggaaccuGGCAu -3'
miRNA:   3'- aAGGAGGUu---UAGGag---GUGCCCG--------CCGU- -5'
11868 3' -58 NC_003266.2 + 8350 0.67 0.374737
Target:  5'- gUCCcCCGuuUCUUCUugGCGGGCGGa- -3'
miRNA:   3'- aAGGaGGUuuAGGAGG--UGCCCGCCgu -5'
11868 3' -58 NC_003266.2 + 17015 0.67 0.365784
Target:  5'- -gCCUCUGAc-CCUgCCGCGGGCGcGCu -3'
miRNA:   3'- aaGGAGGUUuaGGA-GGUGCCCGC-CGu -5'
11868 3' -58 NC_003266.2 + 15899 0.67 0.356979
Target:  5'- -gUCUCCGAGUCCUgC-CGGcGCuGGCGc -3'
miRNA:   3'- aaGGAGGUUUAGGAgGuGCC-CG-CCGU- -5'
11868 3' -58 NC_003266.2 + 9199 0.67 0.348325
Target:  5'- cUCUUCUAcuUCCUCCuCaGGCGGUg -3'
miRNA:   3'- aAGGAGGUuuAGGAGGuGcCCGCCGu -5'
11868 3' -58 NC_003266.2 + 4966 0.68 0.299581
Target:  5'- cUCgCUCCAGGagcUCCUCuCGCuGGGCGGa- -3'
miRNA:   3'- aAG-GAGGUUU---AGGAG-GUG-CCCGCCgu -5'
11868 3' -58 NC_003266.2 + 17799 0.69 0.263127
Target:  5'- cUCCUCCAccugcggcaUCUCCACGGaGcCGGCGg -3'
miRNA:   3'- aAGGAGGUuua------GGAGGUGCC-C-GCCGU- -5'
11868 3' -58 NC_003266.2 + 8717 0.72 0.175132
Target:  5'- cUCCUCCugaaggUCUCCGCGGcCGGCGc -3'
miRNA:   3'- aAGGAGGuuua--GGAGGUGCCcGCCGU- -5'
11868 3' -58 NC_003266.2 + 26815 0.72 0.165606
Target:  5'- cUUCCUCgCAA--CCUCgCuCGGGCGGCAu -3'
miRNA:   3'- -AAGGAG-GUUuaGGAG-GuGCCCGCCGU- -5'
11868 3' -58 NC_003266.2 + 23127 0.72 0.156548
Target:  5'- cUUCUUCUuGGUCCgaggCCACGcGGCGGUAg -3'
miRNA:   3'- -AAGGAGGuUUAGGa---GGUGC-CCGCCGU- -5'
11868 3' -58 NC_003266.2 + 23544 0.76 0.080519
Target:  5'- cUCCUCCucGUgCUCCGCGGGCGuCAc -3'
miRNA:   3'- aAGGAGGuuUAgGAGGUGCCCGCcGU- -5'
11868 3' -58 NC_003266.2 + 11964 0.77 0.065451
Target:  5'- -aCCUCCuGAUCC-CCaauGCGGGCGGCGc -3'
miRNA:   3'- aaGGAGGuUUAGGaGG---UGCCCGCCGU- -5'
11868 3' -58 NC_003266.2 + 25512 1.06 0.000424
Target:  5'- cUUCCUCCAAAUCCUCCACGGGCGGCAg -3'
miRNA:   3'- -AAGGAGGUUUAGGAGGUGCCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.