miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11870 5' -47.3 NC_003266.2 + 14342 0.66 0.955971
Target:  5'- cGGUGAccaUGACCAUugACcugaugaacaacGCCAUCAUc -3'
miRNA:   3'- aCUAUU---ACUGGUAugUG------------UGGUGGUGu -5'
11870 5' -47.3 NC_003266.2 + 8078 0.66 0.951286
Target:  5'- cGAUGGUGGUCAUGCugACgAgcCCGCGc -3'
miRNA:   3'- aCUAUUACUGGUAUGugUGgU--GGUGU- -5'
11870 5' -47.3 NC_003266.2 + 10148 0.66 0.946279
Target:  5'- cGAgcGAUGGCCGcucUACcgccagcCGCCGCCGCAc -3'
miRNA:   3'- aCUa-UUACUGGU---AUGu------GUGGUGGUGU- -5'
11870 5' -47.3 NC_003266.2 + 16427 0.67 0.940944
Target:  5'- aGGUGGUGuCCAUcccGCugGaCCACgGCAa -3'
miRNA:   3'- aCUAUUACuGGUA---UGugU-GGUGgUGU- -5'
11870 5' -47.3 NC_003266.2 + 24698 0.67 0.940944
Target:  5'- ------gGACCGgguucgacgaGCGCACCACCGCc -3'
miRNA:   3'- acuauuaCUGGUa---------UGUGUGGUGGUGu -5'
11870 5' -47.3 NC_003266.2 + 3661 0.67 0.940944
Target:  5'- ---gAAUGGCCAUGgGCGCCgGCUAUu -3'
miRNA:   3'- acuaUUACUGGUAUgUGUGG-UGGUGu -5'
11870 5' -47.3 NC_003266.2 + 11435 0.67 0.929279
Target:  5'- ------cGACUGUGCuGCACCACCAgGa -3'
miRNA:   3'- acuauuaCUGGUAUG-UGUGGUGGUgU- -5'
11870 5' -47.3 NC_003266.2 + 12641 0.68 0.901945
Target:  5'- ------cGACCGgagccUGCACGCC-CCACAg -3'
miRNA:   3'- acuauuaCUGGU-----AUGUGUGGuGGUGU- -5'
11870 5' -47.3 NC_003266.2 + 33439 0.68 0.88631
Target:  5'- cUGAUGcucagGGCCAUugGCAUCAUgCGCAg -3'
miRNA:   3'- -ACUAUua---CUGGUAugUGUGGUG-GUGU- -5'
11870 5' -47.3 NC_003266.2 + 9352 0.69 0.869418
Target:  5'- ------aGACCAUGCgACGCCGgCGCGg -3'
miRNA:   3'- acuauuaCUGGUAUG-UGUGGUgGUGU- -5'
11870 5' -47.3 NC_003266.2 + 6697 0.69 0.869418
Target:  5'- cGAguuguAUGACUacGUGCGCGCCAgcauCCGCGg -3'
miRNA:   3'- aCUau---UACUGG--UAUGUGUGGU----GGUGU- -5'
11870 5' -47.3 NC_003266.2 + 6170 0.69 0.84187
Target:  5'- ------aGACCAUGCGCuCCAUCGCc -3'
miRNA:   3'- acuauuaCUGGUAUGUGuGGUGGUGu -5'
11870 5' -47.3 NC_003266.2 + 15785 0.69 0.84187
Target:  5'- cGGUGGUGcuacggugccGCCGggcgAUGCGCCGCCGCc -3'
miRNA:   3'- aCUAUUAC----------UGGUa---UGUGUGGUGGUGu -5'
11870 5' -47.3 NC_003266.2 + 21400 0.69 0.832139
Target:  5'- --uUGGUGGCCAggGCGCugCGgCGCAg -3'
miRNA:   3'- acuAUUACUGGUa-UGUGugGUgGUGU- -5'
11870 5' -47.3 NC_003266.2 + 30804 0.76 0.463374
Target:  5'- -----cUGAuCCcgACACACCACCACAg -3'
miRNA:   3'- acuauuACU-GGuaUGUGUGGUGGUGU- -5'
11870 5' -47.3 NC_003266.2 + 15598 0.77 0.441665
Target:  5'- aGGUGGUGGCCGacgcucgcaacUACACccccGCCGCCGCGc -3'
miRNA:   3'- aCUAUUACUGGU-----------AUGUG----UGGUGGUGU- -5'
11870 5' -47.3 NC_003266.2 + 29047 1.11 0.002907
Target:  5'- aUGAUAAUGACCAUACACACCACCACAg -3'
miRNA:   3'- -ACUAUUACUGGUAUGUGUGGUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.