Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11870 | 5' | -47.3 | NC_003266.2 | + | 15598 | 0.77 | 0.441665 |
Target: 5'- aGGUGGUGGCCGacgcucgcaacUACACccccGCCGCCGCGc -3' miRNA: 3'- aCUAUUACUGGU-----------AUGUG----UGGUGGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 14342 | 0.66 | 0.955971 |
Target: 5'- cGGUGAccaUGACCAUugACcugaugaacaacGCCAUCAUc -3' miRNA: 3'- aCUAUU---ACUGGUAugUG------------UGGUGGUGu -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 8078 | 0.66 | 0.951286 |
Target: 5'- cGAUGGUGGUCAUGCugACgAgcCCGCGc -3' miRNA: 3'- aCUAUUACUGGUAUGugUGgU--GGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 24698 | 0.67 | 0.940944 |
Target: 5'- ------gGACCGgguucgacgaGCGCACCACCGCc -3' miRNA: 3'- acuauuaCUGGUa---------UGUGUGGUGGUGu -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 16427 | 0.67 | 0.940944 |
Target: 5'- aGGUGGUGuCCAUcccGCugGaCCACgGCAa -3' miRNA: 3'- aCUAUUACuGGUA---UGugU-GGUGgUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 3661 | 0.67 | 0.940944 |
Target: 5'- ---gAAUGGCCAUGgGCGCCgGCUAUu -3' miRNA: 3'- acuaUUACUGGUAUgUGUGG-UGGUGu -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 30804 | 0.76 | 0.463374 |
Target: 5'- -----cUGAuCCcgACACACCACCACAg -3' miRNA: 3'- acuauuACU-GGuaUGUGUGGUGGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 11435 | 0.67 | 0.929279 |
Target: 5'- ------cGACUGUGCuGCACCACCAgGa -3' miRNA: 3'- acuauuaCUGGUAUG-UGUGGUGGUgU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 12641 | 0.68 | 0.901945 |
Target: 5'- ------cGACCGgagccUGCACGCC-CCACAg -3' miRNA: 3'- acuauuaCUGGU-----AUGUGUGGuGGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 33439 | 0.68 | 0.88631 |
Target: 5'- cUGAUGcucagGGCCAUugGCAUCAUgCGCAg -3' miRNA: 3'- -ACUAUua---CUGGUAugUGUGGUG-GUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 6697 | 0.69 | 0.869418 |
Target: 5'- cGAguuguAUGACUacGUGCGCGCCAgcauCCGCGg -3' miRNA: 3'- aCUau---UACUGG--UAUGUGUGGU----GGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 9352 | 0.69 | 0.869418 |
Target: 5'- ------aGACCAUGCgACGCCGgCGCGg -3' miRNA: 3'- acuauuaCUGGUAUG-UGUGGUgGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 15785 | 0.69 | 0.84187 |
Target: 5'- cGGUGGUGcuacggugccGCCGggcgAUGCGCCGCCGCc -3' miRNA: 3'- aCUAUUAC----------UGGUa---UGUGUGGUGGUGu -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 6170 | 0.69 | 0.84187 |
Target: 5'- ------aGACCAUGCGCuCCAUCGCc -3' miRNA: 3'- acuauuaCUGGUAUGUGuGGUGGUGu -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 21400 | 0.69 | 0.832139 |
Target: 5'- --uUGGUGGCCAggGCGCugCGgCGCAg -3' miRNA: 3'- acuAUUACUGGUa-UGUGugGUgGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 29047 | 1.11 | 0.002907 |
Target: 5'- aUGAUAAUGACCAUACACACCACCACAg -3' miRNA: 3'- -ACUAUUACUGGUAUGUGUGGUGGUGU- -5' |
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11870 | 5' | -47.3 | NC_003266.2 | + | 10148 | 0.66 | 0.946279 |
Target: 5'- cGAgcGAUGGCCGcucUACcgccagcCGCCGCCGCAc -3' miRNA: 3'- aCUa-UUACUGGU---AUGu------GUGGUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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