miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11872 3' -55.6 NC_003266.2 + 9812 0.66 0.529778
Target:  5'- cGCGCgGGCGAGgaggaggugcCCGUGGAGcggcucaUGCAGGa -3'
miRNA:   3'- uUGCG-UCGCUC----------GGUACCUC-------ACGUUCg -5'
11872 3' -55.6 NC_003266.2 + 12573 0.66 0.497825
Target:  5'- -uUGCAGgGA-CUGUGGGgcGUGCAGGCu -3'
miRNA:   3'- uuGCGUCgCUcGGUACCU--CACGUUCG- -5'
11872 3' -55.6 NC_003266.2 + 13542 0.67 0.455245
Target:  5'- cAACGCAGgGGGCCAccagccggGGcAGUGCc-GCc -3'
miRNA:   3'- -UUGCGUCgCUCGGUa-------CC-UCACGuuCG- -5'
11872 3' -55.6 NC_003266.2 + 9556 0.67 0.444908
Target:  5'- ----uGGCG-GCgGUGGGGUGUggGCg -3'
miRNA:   3'- uugcgUCGCuCGgUACCUCACGuuCG- -5'
11872 3' -55.6 NC_003266.2 + 22136 0.67 0.444908
Target:  5'- cACGCAGcCGGGCuUGUGGuugcaaucgcAGUGCAGGg -3'
miRNA:   3'- uUGCGUC-GCUCG-GUACC----------UCACGUUCg -5'
11872 3' -55.6 NC_003266.2 + 16987 0.67 0.444908
Target:  5'- cGACgGCGGCGGGUgGUGGucuUGCGgcGGCg -3'
miRNA:   3'- -UUG-CGUCGCUCGgUACCuc-ACGU--UCG- -5'
11872 3' -55.6 NC_003266.2 + 15676 0.68 0.385804
Target:  5'- gGGCGCGGCG-GCg--GGGGUguaguuGCGAGCg -3'
miRNA:   3'- -UUGCGUCGCuCGguaCCUCA------CGUUCG- -5'
11872 3' -55.6 NC_003266.2 + 21080 0.69 0.340679
Target:  5'- --aGCAGgagcucaGGGCCAucauccgcgaccUGGGGUGCGGGCc -3'
miRNA:   3'- uugCGUCg------CUCGGU------------ACCUCACGUUCG- -5'
11872 3' -55.6 NC_003266.2 + 31078 0.69 0.32373
Target:  5'- gGACGCAGUG-GCCAUccaccAGUGCAAGa -3'
miRNA:   3'- -UUGCGUCGCuCGGUAcc---UCACGUUCg -5'
11872 3' -55.6 NC_003266.2 + 24598 0.75 0.149743
Target:  5'- -uCGCGGCGGGCCuccccgcgcaggGUGGuGUGCA-GCa -3'
miRNA:   3'- uuGCGUCGCUCGG------------UACCuCACGUuCG- -5'
11872 3' -55.6 NC_003266.2 + 971 1.08 0.000426
Target:  5'- gAACGCAGCGAGCCAUGGAGUGCAAGCc -3'
miRNA:   3'- -UUGCGUCGCUCGGUACCUCACGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.