miRNA: 3'- gacucAGaGGUCGUCGUCCUC-CU----AGU- -5'
miRNA: 3'- gaCUCagAGGUCGU-------C-GUCCUCCUAGU- -5'
miRNA: 3'- gaCUCaGAGGUCG-UCGUCCUCcuAGU- -5'
miRNA: 3'- -GACUCAGAG---GUCGUCGuCCUCCua-GU- -5'
miRNA: 3'- -GACUCAGAGGUCGUCGUCCUCCUAGU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11873 | 5' | -55.5 | NC_003266.2 | + | 31041 | 0.66 | 0.550575 |
|
Target: 5'- ----uUCgCCAGCAGCAGGAGaGAgccgUCAa -3' miRNA: 3'- gacucAGaGGUCGUCGUCCUC-CU----AGU- -5' |
|||||||
| 11873 | 5' | -55.5 | NC_003266.2 | + | 6363 | 0.66 | 0.516177 |
|
Target: 5'- -aGGGggUCCAGCAuaagcucGuCGGGGGGGUCAg -3' miRNA: 3'- gaCUCagAGGUCGU-------C-GUCCUCCUAGU- -5' |
|||||||
| 11873 | 5' | -55.5 | NC_003266.2 | + | 21068 | 0.68 | 0.423024 |
|
Target: 5'- -cGGG-CUCCGGCgAGCAGGAGc-UCAg -3' miRNA: 3'- gaCUCaGAGGUCG-UCGUCCUCcuAGU- -5' |
|||||||
| 11873 | 5' | -55.5 | NC_003266.2 | + | 25124 | 0.75 | 0.141848 |
|
Target: 5'- uCUGGGUCUCgcuCAGCAGCuGGGGGuugCAg -3' miRNA: 3'- -GACUCAGAG---GUCGUCGuCCUCCua-GU- -5' |
|||||||
| 11873 | 5' | -55.5 | NC_003266.2 | + | 2041 | 1.09 | 0.000461 |
|
Target: 5'- cCUGAGUCUCCAGCAGCAGGAGGAUCAa -3' miRNA: 3'- -GACUCAGAGGUCGUCGUCCUCCUAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home