miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11879 5' -55.2 NC_003266.2 + 4358 0.66 0.587826
Target:  5'- uGGuCCUGCacaacaugaauCCCAGGCGGGAUCUGg -3'
miRNA:   3'- -CC-GGAUGcac--------GGGUUCGUCUUGGACa -5'
11879 5' -55.2 NC_003266.2 + 31171 0.67 0.514099
Target:  5'- uGGCCUGCuucaCCAGGCAGAagauGCCUu- -3'
miRNA:   3'- -CCGGAUGcacgGGUUCGUCU----UGGAca -5'
11879 5' -55.2 NC_003266.2 + 10876 0.68 0.471269
Target:  5'- cGGCCgcCGUGagcggggCCGGGCAGAgucaguaugACCUGg -3'
miRNA:   3'- -CCGGauGCACg------GGUUCGUCU---------UGGACa -5'
11879 5' -55.2 NC_003266.2 + 4078 0.69 0.401024
Target:  5'- gGGCCU-CGUGCUCGGgGguGGugUUGUa -3'
miRNA:   3'- -CCGGAuGCACGGGUU-CguCUugGACA- -5'
11879 5' -55.2 NC_003266.2 + 25270 0.69 0.38221
Target:  5'- cGGCCUGCGUcaucaCCCAGGgGGcgauCCUGg -3'
miRNA:   3'- -CCGGAUGCAc----GGGUUCgUCuu--GGACa -5'
11879 5' -55.2 NC_003266.2 + 13899 0.71 0.321137
Target:  5'- aGGCUccuUACGUGCCaccGCGGuACCUGg -3'
miRNA:   3'- -CCGG---AUGCACGGguuCGUCuUGGACa -5'
11879 5' -55.2 NC_003266.2 + 17481 0.71 0.321136
Target:  5'- cGGCC-GCGUGCCguGucGCGGAGCCa-- -3'
miRNA:   3'- -CCGGaUGCACGGguU--CGUCUUGGaca -5'
11879 5' -55.2 NC_003266.2 + 20516 0.71 0.289652
Target:  5'- gGGCuuCUACGUGCCCGAGggcuacaAGGACCg-- -3'
miRNA:   3'- -CCG--GAUGCACGGGUUCg------UCUUGGaca -5'
11879 5' -55.2 NC_003266.2 + 25298 0.72 0.257874
Target:  5'- cGGCCUugGgcggcugggauugGUCCucGUAGAACCUGa -3'
miRNA:   3'- -CCGGAugCa------------CGGGuuCGUCUUGGACa -5'
11879 5' -55.2 NC_003266.2 + 22180 0.75 0.162986
Target:  5'- cGG-CUGCGUGCCCAccaugggccGGCAG-ACCUGc -3'
miRNA:   3'- -CCgGAUGCACGGGU---------UCGUCuUGGACa -5'
11879 5' -55.2 NC_003266.2 + 11004 1.09 0.000512
Target:  5'- aGGCCUACGUGCCCAAGCAGAACCUGUu -3'
miRNA:   3'- -CCGGAUGCACGGGUUCGUCUUGGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.