miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1188 5' -53.4 NC_001132.2 + 44824 0.66 0.969545
Target:  5'- ---aCGGGCACGCga--CGCGcCCAGg -3'
miRNA:   3'- cauaGCUUGUGCGacugGCGCaGGUC- -5'
1188 5' -53.4 NC_001132.2 + 130289 0.67 0.95186
Target:  5'- ---gCGAugGCGCUGAa--CGUCCGGa -3'
miRNA:   3'- cauaGCUugUGCGACUggcGCAGGUC- -5'
1188 5' -53.4 NC_001132.2 + 27214 0.67 0.947637
Target:  5'- cGUGUCGAauguguACGCGUUGuccgaacCCGUGUCUAa -3'
miRNA:   3'- -CAUAGCU------UGUGCGACu------GGCGCAGGUc -5'
1188 5' -53.4 NC_001132.2 + 21513 0.68 0.922909
Target:  5'- -gGUUGGACgACGCcgugugGACgGCGUCCAu -3'
miRNA:   3'- caUAGCUUG-UGCGa-----CUGgCGCAGGUc -5'
1188 5' -53.4 NC_001132.2 + 152381 0.69 0.898752
Target:  5'- cUAUCGcgUACGC-GGCCGCGUCa-- -3'
miRNA:   3'- cAUAGCuuGUGCGaCUGGCGCAGguc -5'
1188 5' -53.4 NC_001132.2 + 7536 0.7 0.878148
Target:  5'- -cAUCGAGCggauaaagACGCUGuCCGCGgCCAu -3'
miRNA:   3'- caUAGCUUG--------UGCGACuGGCGCaGGUc -5'
1188 5' -53.4 NC_001132.2 + 156580 1.09 0.00557
Target:  5'- uGUAUCGAACACGCUGACCGCGUCCAGa -3'
miRNA:   3'- -CAUAGCUUGUGCGACUGGCGCAGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.