miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11881 5' -54.1 NC_003266.2 + 11469 0.66 0.647266
Target:  5'- uGGUgAauauucUGCAGaGCAUCGUGGUGCagGAg -3'
miRNA:   3'- -CCGgU------ACGUUgCGUAGUACCGCGa-CU- -5'
11881 5' -54.1 NC_003266.2 + 4114 0.66 0.635714
Target:  5'- aGUCAUaGCAgggACGCAgggCGUGGUGUUGc -3'
miRNA:   3'- cCGGUA-CGU---UGCGUa--GUACCGCGACu -5'
11881 5' -54.1 NC_003266.2 + 22327 0.66 0.612611
Target:  5'- cGUCGUGCAcgcagcagcGCGCGUCGuuguUGGCcaGCUGc -3'
miRNA:   3'- cCGGUACGU---------UGCGUAGU----ACCG--CGACu -5'
11881 5' -54.1 NC_003266.2 + 15821 0.67 0.589582
Target:  5'- uGGCCcUGCGcagcaaggcucGCGCcgcacgCAUGGCGgUGGu -3'
miRNA:   3'- -CCGGuACGU-----------UGCGua----GUACCGCgACU- -5'
11881 5' -54.1 NC_003266.2 + 24857 0.67 0.588434
Target:  5'- cGGCCAccUGCucCGCGcugcccucggacuUCGUGcCGCUGAc -3'
miRNA:   3'- -CCGGU--ACGuuGCGU-------------AGUACcGCGACU- -5'
11881 5' -54.1 NC_003266.2 + 15708 0.67 0.566711
Target:  5'- aGCCGgcgGCGGCGCAUCGcccGGCGg--- -3'
miRNA:   3'- cCGGUa--CGUUGCGUAGUa--CCGCgacu -5'
11881 5' -54.1 NC_003266.2 + 15802 0.67 0.555358
Target:  5'- gGGCCAUGCucagggcggccaGACGCGcggcuUCA-GGCGCc-- -3'
miRNA:   3'- -CCGGUACG------------UUGCGU-----AGUaCCGCGacu -5'
11881 5' -54.1 NC_003266.2 + 3704 0.67 0.544073
Target:  5'- uGGCCAUuCcGCGCAc---GGCGCUGGc -3'
miRNA:   3'- -CCGGUAcGuUGCGUaguaCCGCGACU- -5'
11881 5' -54.1 NC_003266.2 + 16219 0.68 0.499768
Target:  5'- aGGCgCGUGCAgugGCGCGggcggaaagugCGUccGGUGCUGAg -3'
miRNA:   3'- -CCG-GUACGU---UGCGUa----------GUA--CCGCGACU- -5'
11881 5' -54.1 NC_003266.2 + 23705 0.69 0.467614
Target:  5'- cGGUCAaGCAGCGCGUCcuugacgaugAUGGC-CUGc -3'
miRNA:   3'- -CCGGUaCGUUGCGUAG----------UACCGcGACu -5'
11881 5' -54.1 NC_003266.2 + 15913 0.7 0.391347
Target:  5'- cGCCGUgGCcGCGCGUCuccgaguccugccGGCGCUGGc -3'
miRNA:   3'- cCGGUA-CGuUGCGUAGua-----------CCGCGACU- -5'
11881 5' -54.1 NC_003266.2 + 9776 0.7 0.387562
Target:  5'- cGGCCGUGCAuACGCGUgAgcccaaacccGCGCUGc -3'
miRNA:   3'- -CCGGUACGU-UGCGUAgUac--------CGCGACu -5'
11881 5' -54.1 NC_003266.2 + 9895 0.7 0.387562
Target:  5'- aGGCCAUccucGCcgAGCGCGUCGucgcugaccUGGCGCUc- -3'
miRNA:   3'- -CCGGUA----CG--UUGCGUAGU---------ACCGCGAcu -5'
11881 5' -54.1 NC_003266.2 + 13044 0.71 0.351059
Target:  5'- gGGcCCAUGUuGCGCgcgGUCAUgucgagcgcGGCGCUGGg -3'
miRNA:   3'- -CC-GGUACGuUGCG---UAGUA---------CCGCGACU- -5'
11881 5' -54.1 NC_003266.2 + 33729 0.72 0.308963
Target:  5'- cGCCAUGCAGCGCAgggaccCcgGGUuCUGGc -3'
miRNA:   3'- cCGGUACGUUGCGUa-----GuaCCGcGACU- -5'
11881 5' -54.1 NC_003266.2 + 12037 1.11 0.000459
Target:  5'- aGGCCAUGCAACGCAUCAUGGCGCUGAc -3'
miRNA:   3'- -CCGGUACGUUGCGUAGUACCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.