Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11882 | 3' | -53.8 | NC_003266.2 | + | 12041 | 0.66 | 0.674929 |
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Target: 5'- cGGCUGGcucUGCAGCGCcgcccgcAUUGCgGGAu -3' miRNA: 3'- -CCGACCac-AUGUUGCG-------UGACGaCCUc -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 9811 | 0.66 | 0.669199 |
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Target: 5'- cGGCUGGacgagcgccagGUcagcgACGACGCGCucggcgaggauggccUGCUGGAu -3' miRNA: 3'- -CCGACCa----------CA-----UGUUGCGUG---------------ACGACCUc -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 22145 | 0.66 | 0.664608 |
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Target: 5'- gGGCUuGUGguUGCAAuCGCAgUGCaGGGGg -3' miRNA: 3'- -CCGAcCAC--AUGUU-GCGUgACGaCCUC- -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 31250 | 0.66 | 0.641588 |
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Target: 5'- aGGCaGGUGaACuucuGGCGCuGCUGCaGGAGc -3' miRNA: 3'- -CCGaCCACaUG----UUGCG-UGACGaCCUC- -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 18665 | 0.67 | 0.600117 |
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Target: 5'- uGGCaGGUGUugGGCGCucccuugggagccagGCUGUUGuAGg -3' miRNA: 3'- -CCGaCCACAugUUGCG---------------UGACGACcUC- -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 9559 | 0.67 | 0.584067 |
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Target: 5'- cGGCgguggGGUGUggGCGgggGCGaUGCUGCUGGuGa -3' miRNA: 3'- -CCGa----CCACA--UGU---UGC-GUGACGACCuC- -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 19715 | 0.68 | 0.505599 |
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Target: 5'- cGCUGGUGgacgccUACAuuaacauugggGCGCGCUggucGCUGGAc -3' miRNA: 3'- cCGACCAC------AUGU-----------UGCGUGA----CGACCUc -5' |
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| 11882 | 3' | -53.8 | NC_003266.2 | + | 12225 | 1.1 | 0.000629 |
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Target: 5'- gGGCUGGUGUACAACGCACUGCUGGAGc -3' miRNA: 3'- -CCGACCACAUGUUGCGUGACGACCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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