miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11882 5' -51.8 NC_003266.2 + 8522 0.7 0.543619
Target:  5'- cCGCgc--GCGGCGCCGACGUGCc--- -3'
miRNA:   3'- -GCGauguUGUCGUGGUUGCACGucug -5'
11882 5' -51.8 NC_003266.2 + 15824 0.7 0.532224
Target:  5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3'
miRNA:   3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5'
11882 5' -51.8 NC_003266.2 + 19190 0.7 0.532224
Target:  5'- -aCUACAACAGCACUGGCaauauggggGUGCuGGCc -3'
miRNA:   3'- gcGAUGUUGUCGUGGUUG---------CACGuCUG- -5'
11882 5' -51.8 NC_003266.2 + 16926 0.7 0.520916
Target:  5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3'
miRNA:   3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5'
11882 5' -51.8 NC_003266.2 + 17566 0.7 0.509702
Target:  5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3'
miRNA:   3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 15724 0.7 0.503023
Target:  5'- uCGCc-CGGCGGCACCGuagcaccaccgccauGCGUGCGGcGCg -3'
miRNA:   3'- -GCGauGUUGUCGUGGU---------------UGCACGUC-UG- -5'
11882 5' -51.8 NC_003266.2 + 25116 0.72 0.434432
Target:  5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3'
miRNA:   3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5'
11882 5' -51.8 NC_003266.2 + 12699 0.72 0.434432
Target:  5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3'
miRNA:   3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 3687 0.73 0.366012
Target:  5'- gCGCUggcggcagaaGCAGCAGCugCGGCG-GCAGcuGCg -3'
miRNA:   3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5'
11882 5' -51.8 NC_003266.2 + 16742 0.73 0.366012
Target:  5'- aGCccauCAcCAGCACCAugGaggUGCAGACg -3'
miRNA:   3'- gCGau--GUuGUCGUGGUugC---ACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 16543 0.73 0.347875
Target:  5'- gCGCU-CGGCAGCACCuGC-UGCAGGg -3'
miRNA:   3'- -GCGAuGUUGUCGUGGuUGcACGUCUg -5'
11882 5' -51.8 NC_003266.2 + 10959 0.75 0.267003
Target:  5'- uCGCcGgAGCGGCACCcGCGgUGCAGAUg -3'
miRNA:   3'- -GCGaUgUUGUCGUGGuUGC-ACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 13348 0.84 0.068962
Target:  5'- cCGCUGCGGCAGCACC--CGUGCGGcCg -3'
miRNA:   3'- -GCGAUGUUGUCGUGGuuGCACGUCuG- -5'
11882 5' -51.8 NC_003266.2 + 12260 1.1 0.001053
Target:  5'- cCGCUACAACAGCACCAACGUGCAGACc -3'
miRNA:   3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.