miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11883 5' -49.5 NC_003266.2 + 11796 0.66 0.881022
Target:  5'- gUGCAUCAGCUccugaucgcUCAgcucGCGCCgcCUGCu -3'
miRNA:   3'- gAUGUGGUUGA---------AGUaau-CGCGG--GACG- -5'
11883 5' -49.5 NC_003266.2 + 6362 0.66 0.864033
Target:  5'- gCUGgACCAACg-----AGC-CCCUGCg -3'
miRNA:   3'- -GAUgUGGUUGaaguaaUCGcGGGACG- -5'
11883 5' -49.5 NC_003266.2 + 18355 0.67 0.858712
Target:  5'- aCUGCACCAgacccggacucagguACUcCGa-AGCGUCCUGUc -3'
miRNA:   3'- -GAUGUGGU---------------UGAaGUaaUCGCGGGACG- -5'
11883 5' -49.5 NC_003266.2 + 12653 0.67 0.845913
Target:  5'- gCUGCugCuGCUgg--UGGCGCCCUuCa -3'
miRNA:   3'- -GAUGugGuUGAaguaAUCGCGGGAcG- -5'
11883 5' -49.5 NC_003266.2 + 2942 0.67 0.836454
Target:  5'- cCUGCGCCggUgggaacagUCAUaugcUGGcCGCCgUGCa -3'
miRNA:   3'- -GAUGUGGuuGa-------AGUA----AUC-GCGGgACG- -5'
11883 5' -49.5 NC_003266.2 + 19686 0.67 0.836454
Target:  5'- gUACAUgAACggcCGgguggUGGCGCCCUcGCu -3'
miRNA:   3'- gAUGUGgUUGaa-GUa----AUCGCGGGA-CG- -5'
11883 5' -49.5 NC_003266.2 + 3629 0.67 0.816793
Target:  5'- -aGCugCuGCUUCugccgccAGCGCCgUGCg -3'
miRNA:   3'- gaUGugGuUGAAGuaa----UCGCGGgACG- -5'
11883 5' -49.5 NC_003266.2 + 8559 0.68 0.785631
Target:  5'- -cACGCCAGuCUUCuccgGGCGCaguaccagaaCCUGCc -3'
miRNA:   3'- gaUGUGGUU-GAAGuaa-UCGCG----------GGACG- -5'
11883 5' -49.5 NC_003266.2 + 10189 0.68 0.785631
Target:  5'- -cGCACCAuGC-UCGaggaccUAGCGCCCgGCg -3'
miRNA:   3'- gaUGUGGU-UGaAGUa-----AUCGCGGGaCG- -5'
11883 5' -49.5 NC_003266.2 + 11569 0.68 0.784561
Target:  5'- --cCGCCAGCUUCucgGacagcggcagcccGCGCuCCUGCa -3'
miRNA:   3'- gauGUGGUUGAAGuaaU-------------CGCG-GGACG- -5'
11883 5' -49.5 NC_003266.2 + 8983 0.68 0.774852
Target:  5'- -cACGCuCAACUaccUCuaccAGCGCCuCUGCa -3'
miRNA:   3'- gaUGUG-GUUGA---AGuaa-UCGCGG-GACG- -5'
11883 5' -49.5 NC_003266.2 + 6678 0.69 0.741535
Target:  5'- -cGCGCCAGCaUCcgcgGGgGCCgCUGCu -3'
miRNA:   3'- gaUGUGGUUGaAGuaa-UCgCGG-GACG- -5'
11883 5' -49.5 NC_003266.2 + 6866 0.69 0.707054
Target:  5'- cCUACGCCcACUUCAUccGCGacucggucggCCUGCc -3'
miRNA:   3'- -GAUGUGGuUGAAGUAauCGCg---------GGACG- -5'
11883 5' -49.5 NC_003266.2 + 15823 0.7 0.69537
Target:  5'- -gACGCgCGGCUUCA--GGCGCCa-GCg -3'
miRNA:   3'- gaUGUG-GUUGAAGUaaUCGCGGgaCG- -5'
11883 5' -49.5 NC_003266.2 + 13605 0.72 0.576802
Target:  5'- aCUGCcCCGGCUgg--UGGCcCCCUGCg -3'
miRNA:   3'- -GAUGuGGUUGAaguaAUCGcGGGACG- -5'
11883 5' -49.5 NC_003266.2 + 21971 0.74 0.431363
Target:  5'- -cGCGcCCGACcugCug-GGCGCCCUGCa -3'
miRNA:   3'- gaUGU-GGUUGaa-GuaaUCGCGGGACG- -5'
11883 5' -49.5 NC_003266.2 + 12430 1.14 0.000899
Target:  5'- aCUACACCAACUUCAUUAGCGCCCUGCg -3'
miRNA:   3'- -GAUGUGGUUGAAGUAAUCGCGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.