Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11884 | 3' | -56.1 | NC_003266.2 | + | 20158 | 0.66 | 0.548398 |
Target: 5'- cCACCAACGugcCCAUCUccauCCCCuCGCg -3' miRNA: 3'- aGUGGUUGC---GGUAGGacuuGGGG-GUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 17701 | 0.67 | 0.442287 |
Target: 5'- -gAUCAACaGCCG-CCUGGAcccgguucCCCCCGCc -3' miRNA: 3'- agUGGUUG-CGGUaGGACUU--------GGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 30450 | 0.67 | 0.442287 |
Target: 5'- aUCGCCuaccuGCGCCA-CC---ACCCCCAg -3' miRNA: 3'- -AGUGGu----UGCGGUaGGacuUGGGGGUg -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 23883 | 0.67 | 0.458525 |
Target: 5'- gCACCcGCGCCGacucccuuuucaaCCUGGGCCCCgGu -3' miRNA: 3'- aGUGGuUGCGGUa------------GGACUUGGGGgUg -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 27170 | 0.67 | 0.472991 |
Target: 5'- -aGCCAGCGCCcgAUCCUGGuCCagcgCCAa -3' miRNA: 3'- agUGGUUGCGG--UAGGACUuGGg---GGUg -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 25032 | 0.67 | 0.479261 |
Target: 5'- cUCugC-ACGCCGcaccgcucccuggCCUGcAACCCCCAg -3' miRNA: 3'- -AGugGuUGCGGUa------------GGAC-UUGGGGGUg -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 24370 | 0.66 | 0.519858 |
Target: 5'- uUCGCCGACGCagaaAUUCUgcgcaaggucgaggaGAACCUgCACu -3' miRNA: 3'- -AGUGGUUGCGg---UAGGA---------------CUUGGGgGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 20007 | 0.66 | 0.526395 |
Target: 5'- uUCACCAgcauuaaccucuACGCCA-CCUucuUCCCCAUg -3' miRNA: 3'- -AGUGGU------------UGCGGUaGGAcuuGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 27653 | 0.66 | 0.546184 |
Target: 5'- cCACCAACGCUA-CCgucgagaccucguUGAaucuaauACCaCCCACa -3' miRNA: 3'- aGUGGUUGCGGUaGG-------------ACU-------UGG-GGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 15605 | 0.68 | 0.432304 |
Target: 5'- -gGCCGACGCUcgCaacuacACCCCCGCc -3' miRNA: 3'- agUGGUUGCGGuaGgacu--UGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 13679 | 0.68 | 0.432304 |
Target: 5'- -aACCcguuCGCUcaCCUGcGCCCCCGCg -3' miRNA: 3'- agUGGuu--GCGGuaGGACuUGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 3643 | 0.68 | 0.422455 |
Target: 5'- cCGCCAGCGCCGUgcgcggaauggCCaUGGGCgCCgGCu -3' miRNA: 3'- aGUGGUUGCGGUA-----------GG-ACUUGgGGgUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 23335 | 0.78 | 0.09024 |
Target: 5'- gUCGCCAAccuCGCCAUCU---GCCCCCACc -3' miRNA: 3'- -AGUGGUU---GCGGUAGGacuUGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 12101 | 0.74 | 0.160789 |
Target: 5'- -gGCCAACcggcucucgGCCAUCCUGGaggccgugguGCCCUCGCg -3' miRNA: 3'- agUGGUUG---------CGGUAGGACU----------UGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 16934 | 0.73 | 0.190178 |
Target: 5'- cCACCAcccgcCGCCGUCgucgccgcacagCUGAACUCCCGCu -3' miRNA: 3'- aGUGGUu----GCGGUAG------------GACUUGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 662 | 0.73 | 0.195513 |
Target: 5'- -gGgCGACGaCCAUCCgGAAcCCCCCACc -3' miRNA: 3'- agUgGUUGC-GGUAGGaCUU-GGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 15318 | 0.72 | 0.243049 |
Target: 5'- gUUACUGACGCCAgacgCCgcaccuGCCCCUACg -3' miRNA: 3'- -AGUGGUUGCGGUa---GGacu---UGGGGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 26353 | 0.71 | 0.263216 |
Target: 5'- cCGCCGGCGCCGcCCaGGACUacuccaCCCGCa -3' miRNA: 3'- aGUGGUUGCGGUaGGaCUUGG------GGGUG- -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 11952 | 0.68 | 0.393734 |
Target: 5'- gCAgCAACaGCCAccUCCUGA-UCCCCAa -3' miRNA: 3'- aGUgGUUG-CGGU--AGGACUuGGGGGUg -5' |
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11884 | 3' | -56.1 | NC_003266.2 | + | 31158 | 0.68 | 0.403166 |
Target: 5'- cCACCGAccauCGCCucUCCUacGAGCUCCUGCa -3' miRNA: 3'- aGUGGUU----GCGGu-AGGA--CUUGGGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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