miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11885 5' -53.4 NC_003266.2 + 19876 0.66 0.704551
Target:  5'- cGCCCgUUGcccaGGAGcauGGAGcGGUAGCg -3'
miRNA:   3'- -CGGGgAACa---CCUUcuuUCUC-CCGUCG- -5'
11885 5' -53.4 NC_003266.2 + 9210 0.66 0.681781
Target:  5'- cCUCCUcaggcggugGUGGcGGGGGAGGGGGCcuGCg -3'
miRNA:   3'- cGGGGAa--------CACC-UUCUUUCUCCCGu-CG- -5'
11885 5' -53.4 NC_003266.2 + 23411 0.66 0.670312
Target:  5'- uGCUUCUUGUcGGcGGu--GGGGGCAGa -3'
miRNA:   3'- -CGGGGAACA-CCuUCuuuCUCCCGUCg -5'
11885 5' -53.4 NC_003266.2 + 10842 0.67 0.635714
Target:  5'- gGCUgCUguugcgGUGGAGGGu-GGGGGC-GCa -3'
miRNA:   3'- -CGGgGAa-----CACCUUCUuuCUCCCGuCG- -5'
11885 5' -53.4 NC_003266.2 + 31605 0.67 0.611457
Target:  5'- uCCCCUucagagUGUGGAGGAAGuuugcagcccgccGGGGccuGCAGUa -3'
miRNA:   3'- cGGGGA------ACACCUUCUUU-------------CUCC---CGUCG- -5'
11885 5' -53.4 NC_003266.2 + 18030 0.68 0.578122
Target:  5'- aGCCac-UGUGGAGGGgcgggGAGuGGGCGGa -3'
miRNA:   3'- -CGGggaACACCUUCU-----UUCuCCCGUCg -5'
11885 5' -53.4 NC_003266.2 + 11869 0.68 0.555358
Target:  5'- gGUCCCUUacguagaagagGUGGAcgaugAGGAuGAGGGCgAGUa -3'
miRNA:   3'- -CGGGGAA-----------CACCU-----UCUUuCUCCCG-UCG- -5'
11885 5' -53.4 NC_003266.2 + 5832 0.69 0.510704
Target:  5'- gGUCCCggccgGGggGGuauaaAAGGGGGCGGg -3'
miRNA:   3'- -CGGGGaaca-CCuuCU-----UUCUCCCGUCg -5'
11885 5' -53.4 NC_003266.2 + 16412 0.69 0.478217
Target:  5'- cGCCCCU----GAAGGAAGAGGuGguGUc -3'
miRNA:   3'- -CGGGGAacacCUUCUUUCUCC-CguCG- -5'
11885 5' -53.4 NC_003266.2 + 23938 0.7 0.450906
Target:  5'- cGCCuCCU--UGGAAGAguucccaagaucuucGAGGgucuGGGCAGCg -3'
miRNA:   3'- -CGG-GGAacACCUUCU---------------UUCU----CCCGUCG- -5'
11885 5' -53.4 NC_003266.2 + 26113 0.7 0.416529
Target:  5'- uGCCCCcgacucUGcUGGAAGAuggcauAGAGGGUGGg -3'
miRNA:   3'- -CGGGGa-----AC-ACCUUCUu-----UCUCCCGUCg -5'
11885 5' -53.4 NC_003266.2 + 6338 0.73 0.293236
Target:  5'- -gCCCUUGcGcGAgcAGAAGGGGGGCAGg -3'
miRNA:   3'- cgGGGAACaC-CU--UCUUUCUCCCGUCg -5'
11885 5' -53.4 NC_003266.2 + 13235 1.15 0.000296
Target:  5'- cGCCCCUUGUGGAAGAAAGAGGGCAGCg -3'
miRNA:   3'- -CGGGGAACACCUUCUUUCUCCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.