Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11886 | 3' | -64 | NC_003266.2 | + | 11848 | 0.67 | 0.185399 |
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Target: 5'- cCGGGUcuugGaaGCCGCGGCGGU-CCCu- -3' miRNA: 3'- uGCCCA----CgaCGGCGUCGCCAcGGGcu -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 16980 | 0.67 | 0.180557 |
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Target: 5'- gGCGGGUGguggucUUGCgGCGGCGGgaGCCgGu -3' miRNA: 3'- -UGCCCAC------GACGgCGUCGCCa-CGGgCu -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 16490 | 0.69 | 0.123722 |
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Target: 5'- aGCaGGUGCUGCCGagcGCGGcGCCgCGu -3' miRNA: 3'- -UGcCCACGACGGCgu-CGCCaCGG-GCu -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 12316 | 0.7 | 0.104846 |
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Target: 5'- cACGuuGGUGCUGuuGUAGCGG-GCCaCGc -3' miRNA: 3'- -UGC--CCACGACggCGUCGCCaCGG-GCu -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 15929 | 0.7 | 0.09918 |
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Target: 5'- cUGGGUGCgcgacGCCGCcaccgguguGCGcGUGCCCGu -3' miRNA: 3'- uGCCCACGa----CGGCGu--------CGC-CACGGGCu -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 11083 | 0.7 | 0.096456 |
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Target: 5'- cGCGGGgcgGgaGCUGCGGCGcG-GCCUGGa -3' miRNA: 3'- -UGCCCa--CgaCGGCGUCGC-CaCGGGCU- -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 23054 | 0.75 | 0.043638 |
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Target: 5'- gGCGGcUGCUGCgGCGGCGGUGguuguuCCUGAg -3' miRNA: 3'- -UGCCcACGACGgCGUCGCCAC------GGGCU- -5' |
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| 11886 | 3' | -64 | NC_003266.2 | + | 13294 | 1.07 | 0.000097 |
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Target: 5'- cACGGGUGCUGCCGCAGCGGUGCCCGAg -3' miRNA: 3'- -UGCCCACGACGGCGUCGCCACGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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