miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11887 5' -52.7 NC_003266.2 + 13285 0.66 0.763352
Target:  5'- gUCcGGCCGCaCG-GGUGCugccGCAGCGg -3'
miRNA:   3'- -AGaCUGGUG-GCaCCACGucu-UGUUGC- -5'
11887 5' -52.7 NC_003266.2 + 8795 0.66 0.752581
Target:  5'- --cGGCCACCGUGGaGCGcgccGGCcGCGg -3'
miRNA:   3'- agaCUGGUGGCACCaCGUc---UUGuUGC- -5'
11887 5' -52.7 NC_003266.2 + 18430 0.66 0.741677
Target:  5'- cUUUGugC-CCGUGGaccgGgAGGACAACa -3'
miRNA:   3'- -AGACugGuGGCACCa---CgUCUUGUUGc -5'
11887 5' -52.7 NC_003266.2 + 11362 0.66 0.741677
Target:  5'- gCUGACgGCgCagcuguuccugGUGGUGCAGcacagucggGACAACGa -3'
miRNA:   3'- aGACUGgUG-G-----------CACCACGUC---------UUGUUGC- -5'
11887 5' -52.7 NC_003266.2 + 17674 0.66 0.730651
Target:  5'- cCUGGCCaaucagGCCGUGcagcgGCAGAuCAACa -3'
miRNA:   3'- aGACUGG------UGGCACca---CGUCUuGUUGc -5'
11887 5' -52.7 NC_003266.2 + 9553 0.66 0.719517
Target:  5'- uUCUGGCgGCgGUGGgguguggGCgGGGGCGAUGc -3'
miRNA:   3'- -AGACUGgUGgCACCa------CG-UCUUGUUGC- -5'
11887 5' -52.7 NC_003266.2 + 16974 0.69 0.582087
Target:  5'- gCUG-CCGCCcUGGUGCGGAgaguguaccgccGCGGCc -3'
miRNA:   3'- aGACuGGUGGcACCACGUCU------------UGUUGc -5'
11887 5' -52.7 NC_003266.2 + 22416 0.71 0.450532
Target:  5'- --gGGCgCAgCGUGGUGCAGcuggccAACAACGa -3'
miRNA:   3'- agaCUG-GUgGCACCACGUC------UUGUUGC- -5'
11887 5' -52.7 NC_003266.2 + 16316 0.72 0.410332
Target:  5'- ---aACCACCGUGGUGcCGGGucuCAGCa -3'
miRNA:   3'- agacUGGUGGCACCAC-GUCUu--GUUGc -5'
11887 5' -52.7 NC_003266.2 + 3370 0.73 0.345621
Target:  5'- aCUGgaGCCGaacuCCGUcccGGUGCAGGACAACa -3'
miRNA:   3'- aGAC--UGGU----GGCA---CCACGUCUUGUUGc -5'
11887 5' -52.7 NC_003266.2 + 15019 0.74 0.312067
Target:  5'- -gUGACguCCGaGGUGguGAGCAGCGu -3'
miRNA:   3'- agACUGguGGCaCCACguCUUGUUGC- -5'
11887 5' -52.7 NC_003266.2 + 11484 0.74 0.304075
Target:  5'- --aGAgCAUCGUGGUGCAGGAgcGCGg -3'
miRNA:   3'- agaCUgGUGGCACCACGUCUUguUGC- -5'
11887 5' -52.7 NC_003266.2 + 14060 1.1 0.000878
Target:  5'- uUCUGACCACCGUGGUGCAGAACAACGa -3'
miRNA:   3'- -AGACUGGUGGCACCACGUCUUGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.