miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11888 5' -57.9 NC_003266.2 + 9381 0.66 0.440325
Target:  5'- -gGCCCGGGGgguccccGUugggcagggagaguGCGCUGACGAuGCa -3'
miRNA:   3'- uaCGGGCCCCa------CA--------------UGUGGUUGCUcCG- -5'
11888 5' -57.9 NC_003266.2 + 4638 0.66 0.433424
Target:  5'- -aGCuCCGaGGGggggaucaUGUcCACCuGCGGGGCg -3'
miRNA:   3'- uaCG-GGC-CCC--------ACAuGUGGuUGCUCCG- -5'
11888 5' -57.9 NC_003266.2 + 24793 0.66 0.414061
Target:  5'- -cGCUCGGGGaaaaugagGUcUGCCAGgucCGAGGCg -3'
miRNA:   3'- uaCGGGCCCCa-------CAuGUGGUU---GCUCCG- -5'
11888 5' -57.9 NC_003266.2 + 2537 0.67 0.404581
Target:  5'- --aCCCGGGaGUGguggACAUgGAUGGGGUc -3'
miRNA:   3'- uacGGGCCC-CACa---UGUGgUUGCUCCG- -5'
11888 5' -57.9 NC_003266.2 + 24511 0.67 0.404581
Target:  5'- -cGCCUGGGGcagaacgugcUGcACACCAcccugcGCGGGGa -3'
miRNA:   3'- uaCGGGCCCC----------ACaUGUGGU------UGCUCCg -5'
11888 5' -57.9 NC_003266.2 + 18297 0.67 0.386038
Target:  5'- -cGCCCacuGGGGca-GCAUCGAUGGGGUg -3'
miRNA:   3'- uaCGGG---CCCCacaUGUGGUUGCUCCG- -5'
11888 5' -57.9 NC_003266.2 + 15563 0.67 0.386038
Target:  5'- aGUGCCCgcgcacgcgcacGGGGUGUugcguggaGCGuuGGCGAGcGCc -3'
miRNA:   3'- -UACGGG------------CCCCACA--------UGUggUUGCUC-CG- -5'
11888 5' -57.9 NC_003266.2 + 28112 0.67 0.37429
Target:  5'- -aGCCCGGGGaccccgagugGUACACCGucucugucccugguGCuGAcGGCu -3'
miRNA:   3'- uaCGGGCCCCa---------CAUGUGGU--------------UG-CU-CCG- -5'
11888 5' -57.9 NC_003266.2 + 19903 0.67 0.368065
Target:  5'- cUGCCCGGGuccUACACCuACGAGuGg -3'
miRNA:   3'- uACGGGCCCcacAUGUGGuUGCUC-Cg -5'
11888 5' -57.9 NC_003266.2 + 22250 0.72 0.177552
Target:  5'- --aCCCGGGGaUGaACGCCGACcAGGCc -3'
miRNA:   3'- uacGGGCCCC-ACaUGUGGUUGcUCCG- -5'
11888 5' -57.9 NC_003266.2 + 14493 1.08 0.000324
Target:  5'- cAUGCCCGGGGUGUACACCAACGAGGCc -3'
miRNA:   3'- -UACGGGCCCCACAUGUGGUUGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.