Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11889 | 5' | -57.7 | NC_003266.2 | + | 15342 | 1.14 | 0.00015 |
Target: 5'- uGCCCCUACGUCUACAAGGCCCUGGGCa -3' miRNA: 3'- -CGGGGAUGCAGAUGUUCCGGGACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 15842 | 0.73 | 0.160992 |
Target: 5'- uGgCCCUGCGUCccgUGCGccuGGCCCUGcGCa -3' miRNA: 3'- -CgGGGAUGCAG---AUGUu--CCGGGACcCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 6623 | 0.71 | 0.211596 |
Target: 5'- aGCCCCUcuACGUCUACGAca-UCUGcGGCa -3' miRNA: 3'- -CGGGGA--UGCAGAUGUUccgGGAC-CCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 3474 | 0.7 | 0.261434 |
Target: 5'- aGCCCUUA--UCUgACGGGGCgucuccccuCCUGGGCg -3' miRNA: 3'- -CGGGGAUgcAGA-UGUUCCG---------GGACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 16731 | 0.7 | 0.275301 |
Target: 5'- uGUCCacg-GUCUGCAcgccaAGGCCCgGGGCc -3' miRNA: 3'- -CGGGgaugCAGAUGU-----UCCGGGaCCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 23938 | 0.7 | 0.280292 |
Target: 5'- cGCCuCCUugGaagaguucccaagaUCUuCGAGGgUCUGGGCa -3' miRNA: 3'- -CGG-GGAugC--------------AGAuGUUCCgGGACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 33783 | 0.69 | 0.304789 |
Target: 5'- gGUCCCUGCG-CUGCAuGGC---GGGCg -3' miRNA: 3'- -CGGGGAUGCaGAUGUuCCGggaCCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 14736 | 0.69 | 0.304789 |
Target: 5'- aGCCaCC-GCcUCUAcCGAGGUCCgGGGCg -3' miRNA: 3'- -CGG-GGaUGcAGAU-GUUCCGGGaCCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 428 | 0.68 | 0.335817 |
Target: 5'- aCCCCcACGuaaacggucaaagUCUACucGGCCCUcGGCa -3' miRNA: 3'- cGGGGaUGC-------------AGAUGuuCCGGGAcCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 3830 | 0.68 | 0.353456 |
Target: 5'- cGCCCagGCG-CUGgguCAAGGCCucgagCUGGGCc -3' miRNA: 3'- -CGGGgaUGCaGAU---GUUCCGG-----GACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 25328 | 0.68 | 0.365574 |
Target: 5'- cCCCCUGgGUgaugacgcaggccgaCaGCucGGCCUUGGGCg -3' miRNA: 3'- cGGGGAUgCA---------------GaUGuuCCGGGACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 24668 | 0.67 | 0.37977 |
Target: 5'- aGCUCCUGCagaagaacCU-CAAGGCCCUGuGGa -3' miRNA: 3'- -CGGGGAUGca------GAuGUUCCGGGAC-CCg -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 17996 | 0.67 | 0.405486 |
Target: 5'- aGCCCCUGcCGcCggugGCcguGGCCCgcgcgcgaccggGGGCu -3' miRNA: 3'- -CGGGGAU-GCaGa---UGuu-CCGGGa-----------CCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 11270 | 0.67 | 0.426444 |
Target: 5'- cGCaCCCUGa-UCgcgcGCGAGGaggugaCCCUGGGCc -3' miRNA: 3'- -CG-GGGAUgcAGa---UGUUCC------GGGACCCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 13588 | 0.67 | 0.426444 |
Target: 5'- cCCCCUGCGUUgccCGGGGaucguCCCUGuGCu -3' miRNA: 3'- cGGGGAUGCAGau-GUUCC-----GGGACcCG- -5' |
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11889 | 5' | -57.7 | NC_003266.2 | + | 7059 | 0.66 | 0.486689 |
Target: 5'- aGCCCUUcuccACGg--GgAGGGCauaggCCUGGGCg -3' miRNA: 3'- -CGGGGA----UGCagaUgUUCCG-----GGACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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