Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11891 | 3' | -56.2 | NC_003266.2 | + | 8286 | 0.67 | 0.483463 |
Target: 5'- --cACCGCGCCGUu---GG-UGGCGa -3' miRNA: 3'- uuuUGGCGCGGCAucuuCCgACCGCc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 8410 | 0.66 | 0.537358 |
Target: 5'- gAGGACgCGCGCCG--GgcGGUaggGGCGGc -3' miRNA: 3'- -UUUUG-GCGCGGCauCuuCCGa--CCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 8499 | 0.67 | 0.432304 |
Target: 5'- --uACUGCGCCcggAGAAGaCUGGCGu -3' miRNA: 3'- uuuUGGCGCGGca-UCUUCcGACCGCc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 8866 | 0.66 | 0.537358 |
Target: 5'- -cAGCCGCGUC-UGGAacgAGGCgGGCa- -3' miRNA: 3'- uuUUGGCGCGGcAUCU---UCCGaCCGcc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 8903 | 0.68 | 0.384445 |
Target: 5'- aAAAACCGCGuaGUugcAGAGGcGCUGGUa- -3' miRNA: 3'- -UUUUGGCGCggCA---UCUUC-CGACCGcc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 10875 | 0.68 | 0.399376 |
Target: 5'- gGAGGCagaaGCGCCGgcuguugcguaggAGggGGCUGcuguuGCGGu -3' miRNA: 3'- -UUUUGg---CGCGGCa------------UCuuCCGAC-----CGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 11412 | 0.72 | 0.218177 |
Target: 5'- -cAGCUGCGCCGUcAGcGGuuuGCUGGUGGg -3' miRNA: 3'- uuUUGGCGCGGCA-UCuUC---CGACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 11506 | 0.7 | 0.323605 |
Target: 5'- cGGGCUGcCGCUGUccgAGAA-GCUGGCGGc -3' miRNA: 3'- uUUUGGC-GCGGCA---UCUUcCGACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 14723 | 0.67 | 0.449352 |
Target: 5'- -cAACCGCaGCCGUAGccaccgccucuaccGAGGUccggGGCGa -3' miRNA: 3'- uuUUGGCG-CGGCAUC--------------UUCCGa---CCGCc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 15697 | 0.66 | 0.494046 |
Target: 5'- ---cCCGCGCCaagAGccGGC-GGCGGc -3' miRNA: 3'- uuuuGGCGCGGca-UCuuCCGaCCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 16511 | 0.67 | 0.472991 |
Target: 5'- --cGCCGCGUCGgggcuuGAAGcGCgagGGCGa -3' miRNA: 3'- uuuUGGCGCGGCau----CUUC-CGa--CCGCc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 17135 | 1.09 | 0.000427 |
Target: 5'- gAAAACCGCGCCGUAGAAGGCUGGCGGg -3' miRNA: 3'- -UUUUGGCGCGGCAUCUUCCGACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 17233 | 0.7 | 0.292193 |
Target: 5'- --cGCCGcCGCCGgu-GGGGgUGGCGGc -3' miRNA: 3'- uuuUGGC-GCGGCaucUUCCgACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 17842 | 0.66 | 0.494046 |
Target: 5'- cGAACCGCccCCGUAcGAGGa-GGCGGu -3' miRNA: 3'- uUUUGGCGc-GGCAUcUUCCgaCCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 20783 | 0.66 | 0.53077 |
Target: 5'- -uAACgGCGCUcuugccgaugagcggGUAGggGuaGUUGGCGGg -3' miRNA: 3'- uuUUGgCGCGG---------------CAUCuuC--CGACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 23024 | 0.68 | 0.422455 |
Target: 5'- gAAAAgaG-GCCGaGGAGGaGCUGGCGGc -3' miRNA: 3'- -UUUUggCgCGGCaUCUUC-CGACCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 23472 | 0.69 | 0.34023 |
Target: 5'- uGGGGCCGCGaCaaagGUGGcGGGGCUgGGCGGc -3' miRNA: 3'- -UUUUGGCGC-Gg---CAUC-UUCCGA-CCGCC- -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 23806 | 0.67 | 0.472991 |
Target: 5'- --cGCagGUGCCGUu--GGGCUGGCGc -3' miRNA: 3'- uuuUGg-CGCGGCAucuUCCGACCGCc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 26403 | 0.67 | 0.441283 |
Target: 5'- uGGGCgGCGCCGgcGGccaggcccaucugGGGCUGGUa- -3' miRNA: 3'- uUUUGgCGCGGCauCU-------------UCCGACCGcc -5' |
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11891 | 3' | -56.2 | NC_003266.2 | + | 31050 | 0.72 | 0.245661 |
Target: 5'- cGAGCCGCgGCCGUccauguccAGGAGGUcguugacaguguuguUGGUGGg -3' miRNA: 3'- uUUUGGCG-CGGCA--------UCUUCCG---------------ACCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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