Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 6375 | 0.68 | 0.090485 |
Target: 5'- gGCgGCCGCCUCUGCUGGaccaacgagccccUGcGCGGCGa -3' miRNA: 3'- gCGgCGGUGGGGGUGGCC-------------GC-CGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 16081 | 0.68 | 0.085993 |
Target: 5'- gCGCCuGagaucuaCGgCCCCG-CGGCGGCGGUGa -3' miRNA: 3'- -GCGG-Cg------GUgGGGGUgGCCGCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 17988 | 0.68 | 0.083715 |
Target: 5'- aGUgGCUaaGCCCCUGCCGcCGGUGGCc -3' miRNA: 3'- gCGgCGG--UGGGGGUGGCcGCCGCCGc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 3711 | 0.69 | 0.075166 |
Target: 5'- gCGCCcaugGCCAUUCCgCGCaCGGCgcuGGCGGCa -3' miRNA: 3'- -GCGG----CGGUGGGG-GUG-GCCG---CCGCCGc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 16972 | 0.69 | 0.071019 |
Target: 5'- cCGCUGCCGCCCUggugcggagagugUACCGccGCGGCcGCGc -3' miRNA: 3'- -GCGGCGGUGGGG-------------GUGGC--CGCCGcCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 18061 | 0.7 | 0.067457 |
Target: 5'- gCGCgGgCCACggCCACCGGCGGCaggGGCu -3' miRNA: 3'- -GCGgC-GGUGggGGUGGCCGCCG---CCGc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 16006 | 0.7 | 0.067457 |
Target: 5'- gCGCacggGCaCGCgCaCACCGGUGGCGGCGu -3' miRNA: 3'- -GCGg---CG-GUGgGgGUGGCCGCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 17708 | 0.7 | 0.065297 |
Target: 5'- aGCCGCCuggacccgguucCCCCCGCCGGCuccGUGGa- -3' miRNA: 3'- gCGGCGGu-----------GGGGGUGGCCGc--CGCCgc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 4820 | 0.7 | 0.061175 |
Target: 5'- aGCCgGUCAUugggguuaucuacggCCCCACCGGCuGCGGUa -3' miRNA: 3'- gCGG-CGGUG---------------GGGGUGGCCGcCGCCGc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 15925 | 0.7 | 0.060513 |
Target: 5'- gGCCGCUGCCgCCGCCG-UGGCcGCGc -3' miRNA: 3'- gCGGCGGUGGgGGUGGCcGCCGcCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 10099 | 0.71 | 0.054263 |
Target: 5'- aGCgGCCAUCgCUCGgUGGCGGgGGCGc -3' miRNA: 3'- gCGgCGGUGG-GGGUgGCCGCCgCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 10160 | 0.71 | 0.054115 |
Target: 5'- aGCCGUagauguaccuugaCAUCCaggugaUGCCGGCGGCGGUGg -3' miRNA: 3'- gCGGCG-------------GUGGGg-----GUGGCCGCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 15771 | 0.71 | 0.052801 |
Target: 5'- uGCCGCCgggcgaugcGCCgCCGCCGGCucuuGGCgcgGGCGu -3' miRNA: 3'- gCGGCGG---------UGGgGGUGGCCG----CCG---CCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 8489 | 0.72 | 0.044801 |
Target: 5'- uGCCuccgggucccgaGCCGCCCCUACCGccCGGCGcGCGu -3' miRNA: 3'- gCGG------------CGGUGGGGGUGGCc-GCCGC-CGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 9364 | 0.72 | 0.042291 |
Target: 5'- gCGCCGUCACCgagaCCaugcgacGCCGGCG-CGGCGa -3' miRNA: 3'- -GCGGCGGUGGg---GG-------UGGCCGCcGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 25677 | 0.72 | 0.04206 |
Target: 5'- uGCUGCUugCUuucuCCGCCgaggacgacggucuGGCGGCGGCGg -3' miRNA: 3'- gCGGCGGugGG----GGUGG--------------CCGCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 11905 | 0.74 | 0.027273 |
Target: 5'- cCGCCGCgGCUUCCAagacCCGGCGGCugGGCu -3' miRNA: 3'- -GCGGCGgUGGGGGU----GGCCGCCG--CCGc -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 17237 | 0.75 | 0.025098 |
Target: 5'- gGCgCGCCGCCgCCGgUGGgGGUGGCGg -3' miRNA: 3'- gCG-GCGGUGGgGGUgGCCgCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 15686 | 0.79 | 0.010297 |
Target: 5'- gCGCCGgUACgCCCgcgccaagaGCCGGCGGCGGCGc -3' miRNA: 3'- -GCGGCgGUGgGGG---------UGGCCGCCGCCGC- -5' |
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11891 | 5' | -68.8 | NC_003266.2 | + | 17172 | 1.06 | 0.000056 |
Target: 5'- gCGCCGCCACCCCCACCGGCGGCGGCGc -3' miRNA: 3'- -GCGGCGGUGGGGGUGGCCGCCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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