Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11892 | 3' | -54.1 | NC_003266.2 | + | 12288 | 0.66 | 0.647435 |
Target: 5'- -cGCUCCaGCAgUGCguugUACAcCAGCCc -3' miRNA: 3'- gaUGAGGcCGUgACGg---AUGUuGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 13616 | 0.66 | 0.635933 |
Target: 5'- uUACgggCGGCACUGCCc-CGGCugguGGCCc -3' miRNA: 3'- gAUGag-GCCGUGACGGauGUUG----UCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 11004 | 0.66 | 0.612929 |
Target: 5'- -cGCUCCGGCgACgacGCCcccagGCGcgcCAGCCc -3' miRNA: 3'- gaUGAGGCCG-UGa--CGGa----UGUu--GUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 10167 | 0.66 | 0.612929 |
Target: 5'- -cGC-CCGGCGCccccGCCaccgaGCGAUGGCCg -3' miRNA: 3'- gaUGaGGCCGUGa---CGGa----UGUUGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 8024 | 0.67 | 0.60145 |
Target: 5'- cCUGCaUCUGGUGCUGUaCUACGucguggugguCGGCCu -3' miRNA: 3'- -GAUG-AGGCCGUGACG-GAUGUu---------GUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 15340 | 0.67 | 0.589999 |
Target: 5'- -gACUccCCGGaUACUGCUgcGCAGCGGCa -3' miRNA: 3'- gaUGA--GGCC-GUGACGGa-UGUUGUCGg -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 5870 | 0.67 | 0.567222 |
Target: 5'- -gACccCCGGuCACgugGCCUACAcuuACaAGCCa -3' miRNA: 3'- gaUGa-GGCC-GUGa--CGGAUGU---UG-UCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 31514 | 0.67 | 0.555916 |
Target: 5'- -aGCUCUGGUACUGCaggcccCGGCGGgCu -3' miRNA: 3'- gaUGAGGCCGUGACGgau---GUUGUCgG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 13357 | 0.67 | 0.555916 |
Target: 5'- --cCUCgGGCACcG-CUGCGGCAGCa -3' miRNA: 3'- gauGAGgCCGUGaCgGAUGUUGUCGg -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 13285 | 0.68 | 0.544676 |
Target: 5'- ---gUCCGGCcgcacggguGCUGCC-GCAGCGGUg -3' miRNA: 3'- gaugAGGCCG---------UGACGGaUGUUGUCGg -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 9303 | 0.68 | 0.544676 |
Target: 5'- uCUGC-CCGuGCGCcGCCgGCGACgcaGGCCc -3' miRNA: 3'- -GAUGaGGC-CGUGaCGGaUGUUG---UCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 2930 | 0.68 | 0.533511 |
Target: 5'- aUGCUUgaucuUGGCAUUGCCcuUGCAcagcacaaaACAGCCc -3' miRNA: 3'- gAUGAG-----GCCGUGACGG--AUGU---------UGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 3695 | 0.68 | 0.533511 |
Target: 5'- -cGCgcaCGGCGCUGgCggcagaaGCAGCAGCUg -3' miRNA: 3'- gaUGag-GCCGUGACgGa------UGUUGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 14872 | 0.69 | 0.479066 |
Target: 5'- gUGCUCuCGGacaagaaaaaCACcGCCUACcGCAGCUg -3' miRNA: 3'- gAUGAG-GCC----------GUGaCGGAUGuUGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 11805 | 0.69 | 0.458053 |
Target: 5'- gCUACUUUgacaugGGCGCgGaCCUGCAcugGCAGCCc -3' miRNA: 3'- -GAUGAGG------CCGUGaC-GGAUGU---UGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 34037 | 0.69 | 0.458053 |
Target: 5'- ---aUCCGGUGCUGCCUgauuGCGAUAcCCu -3' miRNA: 3'- gaugAGGCCGUGACGGA----UGUUGUcGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 1848 | 0.69 | 0.447734 |
Target: 5'- aCUACUCCuGGCagaaccACUGCa-GCAGUAGCCu -3' miRNA: 3'- -GAUGAGG-CCG------UGACGgaUGUUGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 31241 | 0.7 | 0.398165 |
Target: 5'- -aACuUCUGGCGCUGC-UGCAGgAGCUc -3' miRNA: 3'- gaUG-AGGCCGUGACGgAUGUUgUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 34158 | 0.7 | 0.383062 |
Target: 5'- cCUGgUCCgGGCACUGCacaccgcucgucgGCGACGGUCu -3' miRNA: 3'- -GAUgAGG-CCGUGACGga-----------UGUUGUCGG- -5' |
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11892 | 3' | -54.1 | NC_003266.2 | + | 24863 | 0.7 | 0.379347 |
Target: 5'- cCUGCUCC-GCGCUGCCcucggACuuCGuGCCg -3' miRNA: 3'- -GAUGAGGcCGUGACGGa----UGuuGU-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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