Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11893 | 3' | -53.7 | NC_003266.2 | + | 22033 | 0.66 | 0.640435 |
Target: 5'- cGCUCGCCAGCACCGuaGCGucggugaucccguCCacguCGAGg -3' miRNA: 3'- aCGGGUGGUUGUGGU--UGU-------------GGau--GCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 2991 | 0.66 | 0.680648 |
Target: 5'- -uCCCACCGGCGCagguCAGCAUCUGguagccgcgcucgucCGAGg -3' miRNA: 3'- acGGGUGGUUGUG----GUUGUGGAU---------------GCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 10235 | 0.66 | 0.680648 |
Target: 5'- cG-CCGCCGGCAUCAccuggaugucaagguACAUCUACGGc -3' miRNA: 3'- aCgGGUGGUUGUGGU---------------UGUGGAUGCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 21240 | 0.66 | 0.687494 |
Target: 5'- cGCCUggaACCcGCGCUcgAACACCUGCu-- -3' miRNA: 3'- aCGGG---UGGuUGUGG--UUGUGGAUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 13909 | 0.66 | 0.687494 |
Target: 5'- cGUgCCACCGcggUACCuGGCGCCUACGGa -3' miRNA: 3'- aCG-GGUGGUu--GUGG-UUGUGGAUGCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 7850 | 0.66 | 0.641588 |
Target: 5'- gGCUCGCauccucGCACCGAaaggcucuuccuCACCUACGAu -3' miRNA: 3'- aCGGGUGgu----UGUGGUU------------GUGGAUGCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 12257 | 0.66 | 0.687494 |
Target: 5'- gGCCCGCU-ACAaCAGCACCaACGuGc -3' miRNA: 3'- aCGGGUGGuUGUgGUUGUGGaUGCuC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 18601 | 0.66 | 0.687494 |
Target: 5'- gGCUC-CCAagggaGCGcCCAACACCUGCcAGu -3' miRNA: 3'- aCGGGuGGU-----UGU-GGUUGUGGAUGcUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 17301 | 0.66 | 0.686355 |
Target: 5'- gGCCUcUCAGCGCCAcugagacACACaCUugGAa -3' miRNA: 3'- aCGGGuGGUUGUGGU-------UGUG-GAugCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 11773 | 0.66 | 0.664608 |
Target: 5'- gGCCCugACCGGgGCCGGgACCgaggGgGAGa -3' miRNA: 3'- aCGGG--UGGUUgUGGUUgUGGa---UgCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 5181 | 0.66 | 0.641588 |
Target: 5'- gUGCgCGCCGGgcUgGGCGCUUGCGAGg -3' miRNA: 3'- -ACGgGUGGUUguGgUUGUGGAUGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 22232 | 0.67 | 0.584067 |
Target: 5'- aGCCU-CCAGCugCuuaAACGCCUGCuGGGc -3' miRNA: 3'- aCGGGuGGUUGugG---UUGUGGAUG-CUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 17879 | 0.67 | 0.572654 |
Target: 5'- cUGCCCACCAcgcgucccauuGCGCCucUAgCUACcGGGg -3' miRNA: 3'- -ACGGGUGGU-----------UGUGGuuGUgGAUG-CUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 14840 | 0.67 | 0.630058 |
Target: 5'- aGCCUugGCCGcCGCC-ACugCUGCGGc -3' miRNA: 3'- aCGGG--UGGUuGUGGuUGugGAUGCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 17710 | 0.67 | 0.630058 |
Target: 5'- gGUCCACCAcccCGuuGAUGCCUgagGCGAGg -3' miRNA: 3'- aCGGGUGGUu--GUggUUGUGGA---UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 16560 | 0.67 | 0.607015 |
Target: 5'- aGCCCcgACgCGGCGCCGcgcucggcaGCACCUGCu-- -3' miRNA: 3'- aCGGG--UG-GUUGUGGU---------UGUGGAUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 20636 | 0.67 | 0.630058 |
Target: 5'- gGCCUACCAACA-CAACAaCU-CGGGc -3' miRNA: 3'- aCGGGUGGUUGUgGUUGUgGAuGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 24313 | 0.67 | 0.61853 |
Target: 5'- gGUCCcaGCCAccGCGCCAGCugCUcgucgcugaccACGGGc -3' miRNA: 3'- aCGGG--UGGU--UGUGGUUGugGA-----------UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 25053 | 0.68 | 0.527625 |
Target: 5'- cUGgCCugCAACccCCAGCugCUgaGCGAGa -3' miRNA: 3'- -ACgGGugGUUGu-GGUUGugGA--UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 16249 | 0.68 | 0.516565 |
Target: 5'- cGUCCGgugcugagacCCGGCACCAcggugguuuucGCGCCUgGCGAGc -3' miRNA: 3'- aCGGGU----------GGUUGUGGU-----------UGUGGA-UGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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