Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11893 | 3' | -53.7 | NC_003266.2 | + | 15482 | 0.68 | 0.527625 |
Target: 5'- cGCUCGCCAACGCuccacgCAACACCccgUGCGc- -3' miRNA: 3'- aCGGGUGGUUGUG------GUUGUGG---AUGCuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 22357 | 0.68 | 0.527625 |
Target: 5'- gUGCgCUACCAACcaguuuuCUAGCAaguCCUGCGGGg -3' miRNA: 3'- -ACG-GGUGGUUGu------GGUUGU---GGAUGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 25053 | 0.68 | 0.527625 |
Target: 5'- cUGgCCugCAACccCCAGCugCUgaGCGAGa -3' miRNA: 3'- -ACgGGugGUUGu-GGUUGugGA--UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 15892 | 0.68 | 0.516565 |
Target: 5'- aGUCCuGCCGGCGCUGGCGCCUGa--- -3' miRNA: 3'- aCGGG-UGGUUGUGGUUGUGGAUgcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 18506 | 0.68 | 0.516565 |
Target: 5'- gUGCUgGaCAugGCCAGCACCUACu-- -3' miRNA: 3'- -ACGGgUgGUugUGGUUGUGGAUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 16249 | 0.68 | 0.516565 |
Target: 5'- cGUCCGgugcugagacCCGGCACCAcggugguuuucGCGCCUgGCGAGc -3' miRNA: 3'- aCGGGU----------GGUUGUGGU-----------UGUGGA-UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 12036 | 0.69 | 0.505599 |
Target: 5'- gGCUCugCAGCGCCGccCGCaUUGCGGGa -3' miRNA: 3'- aCGGGugGUUGUGGUu-GUG-GAUGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 12221 | 0.69 | 0.505599 |
Target: 5'- cGUUCACgAugGCCAGCACCUucucguGCGuGg -3' miRNA: 3'- aCGGGUGgUugUGGUUGUGGA------UGCuC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 8526 | 0.69 | 0.494735 |
Target: 5'- cUGCCCGCgcgCGGCGCCGACGugccCCUGCc-- -3' miRNA: 3'- -ACGGGUG---GUUGUGGUUGU----GGAUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 20677 | 0.69 | 0.483978 |
Target: 5'- cGCCCACUAuGCGCCAGgGCCaGCc-- -3' miRNA: 3'- aCGGGUGGU-UGUGGUUgUGGaUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 20371 | 0.69 | 0.46281 |
Target: 5'- gGCCCGgCAACgACCGGCuCCUgacgcccaACGAGu -3' miRNA: 3'- aCGGGUgGUUG-UGGUUGuGGA--------UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 16276 | 0.7 | 0.45241 |
Target: 5'- cGCCCGCgCcACugCAcGCGCCUcCGGGg -3' miRNA: 3'- aCGGGUG-GuUGugGU-UGUGGAuGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 19897 | 0.7 | 0.442139 |
Target: 5'- cUGCuCCugcCCGGguCCuACACCUACGAGu -3' miRNA: 3'- -ACG-GGu--GGUUguGGuUGUGGAUGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 3761 | 0.7 | 0.432001 |
Target: 5'- gGCCCagcucgagGCCuuGAC-CCAGCGCCUggGCGAGc -3' miRNA: 3'- aCGGG--------UGG--UUGuGGUUGUGGA--UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 18318 | 0.7 | 0.412139 |
Target: 5'- aGUUCGCCcGCGCCAcagACACCUACu-- -3' miRNA: 3'- aCGGGUGGuUGUGGU---UGUGGAUGcuc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 15725 | 0.7 | 0.402422 |
Target: 5'- cGCCCGgCGGCACCGuaGCACCaccgccaugcgUGCGGc -3' miRNA: 3'- aCGGGUgGUUGUGGU--UGUGG-----------AUGCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 9363 | 0.71 | 0.383431 |
Target: 5'- cGCCguCACCGAgACCAugcgACGCCggcgcgGCGAGa -3' miRNA: 3'- aCGG--GUGGUUgUGGU----UGUGGa-----UGCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 16742 | 0.71 | 0.380634 |
Target: 5'- aGCCCaucACCAGCACCAugGaggugcagacggauCCUugGAu -3' miRNA: 3'- aCGGG---UGGUUGUGGUugU--------------GGAugCUc -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 26660 | 0.71 | 0.356082 |
Target: 5'- cGCCCGCCAGC-UgGACACCU--GAGu -3' miRNA: 3'- aCGGGUGGUUGuGgUUGUGGAugCUC- -5' |
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11893 | 3' | -53.7 | NC_003266.2 | + | 12400 | 0.71 | 0.356082 |
Target: 5'- aGCCCGCCAACGugccCCGGgGCC-AgGAGg -3' miRNA: 3'- aCGGGUGGUUGU----GGUUgUGGaUgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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