Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11896 | 3' | -53.9 | NC_003266.2 | + | 20028 | 1.12 | 0.000437 |
Target: 5'- gCCACCUUCUUCCCCAUGGCGCACAACa -3' miRNA: 3'- -GGUGGAAGAAGGGGUACCGCGUGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 6261 | 0.86 | 0.03744 |
Target: 5'- aCCACCgUCUUCCCCgaauggaagugcGUGGCGCGCGAg -3' miRNA: 3'- -GGUGGaAGAAGGGG------------UACCGCGUGUUg -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 8558 | 0.72 | 0.303818 |
Target: 5'- aCGCCagUCUUCUCCG-GGCGCAguACc -3' miRNA: 3'- gGUGGa-AGAAGGGGUaCCGCGUguUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 11961 | 0.72 | 0.311776 |
Target: 5'- gCCACCUcCUgaUCCCCAauGCGgGCGGCg -3' miRNA: 3'- -GGUGGAaGA--AGGGGUacCGCgUGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 16468 | 0.72 | 0.319892 |
Target: 5'- aCCACC-UCUUCCuUCAggGGCGCAaGGCg -3' miRNA: 3'- -GGUGGaAGAAGG-GGUa-CCGCGUgUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 27606 | 0.72 | 0.328165 |
Target: 5'- aCCACC-UCUUCCCCA--GCGCcgcuccucacuaACAACc -3' miRNA: 3'- -GGUGGaAGAAGGGGUacCGCG------------UGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 8868 | 0.72 | 0.336595 |
Target: 5'- aCCACCUgggCgagguugagCUCCAcgUGGCGCGCAAa -3' miRNA: 3'- -GGUGGAa--Gaa-------GGGGU--ACCGCGUGUUg -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 10121 | 0.71 | 0.375539 |
Target: 5'- gCCGCCgcaCUUCCUCAucggcuaccaguaccUGGUGCGCAccuGCa -3' miRNA: 3'- -GGUGGaa-GAAGGGGU---------------ACCGCGUGU---UG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 18238 | 0.71 | 0.390436 |
Target: 5'- cCCAUCgaugCUgCCCCAgugGGCGUACAuGCa -3' miRNA: 3'- -GGUGGaa--GAaGGGGUa--CCGCGUGU-UG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 14056 | 0.7 | 0.439395 |
Target: 5'- -aACUUUCUgaCCaCCGUGGUGCAgAACa -3' miRNA: 3'- ggUGGAAGAa-GG-GGUACCGCGUgUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 28405 | 0.69 | 0.459937 |
Target: 5'- aCACCUUUUUCagaCCAUGGCcucuguUACAGCc -3' miRNA: 3'- gGUGGAAGAAGg--GGUACCGc-----GUGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 5980 | 0.68 | 0.534359 |
Target: 5'- cCCGCCUUugagagggaauacCUaCCCCAacagcUGGCGCuccuggACAGCg -3' miRNA: 3'- -GGUGGAA-------------GAaGGGGU-----ACCGCG------UGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 15639 | 0.66 | 0.626388 |
Target: 5'- aCCACCUggucgaucacgUCgUCgaCgGUGGUGCGCGACc -3' miRNA: 3'- -GGUGGA-----------AGaAGg-GgUACCGCGUGUUG- -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 26293 | 0.66 | 0.649377 |
Target: 5'- cCCGCCUUUUUCCgUGUgugGGCGgGCGc- -3' miRNA: 3'- -GGUGGAAGAAGGgGUA---CCGCgUGUug -5' |
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11896 | 3' | -53.9 | NC_003266.2 | + | 21134 | 0.66 | 0.672296 |
Target: 5'- gCACCUUCgauaagcgaUUCCCgggauuCAUGGCcccGCACAAg -3' miRNA: 3'- gGUGGAAG---------AAGGG------GUACCG---CGUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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