miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11896 5' -55.7 NC_003266.2 + 12371 0.66 0.539394
Target:  5'- cGCGCU--GGGCCAcgGCUucGCGCAcguCGGu -3'
miRNA:   3'- -UGCGAacUCCGGUa-CGA--CGCGUu--GCU- -5'
11896 5' -55.7 NC_003266.2 + 26546 0.66 0.539394
Target:  5'- uACGCggauUGAGGUgAuUGCgggGCGUGGCGGu -3'
miRNA:   3'- -UGCGa---ACUCCGgU-ACGa--CGCGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 20103 0.66 0.495524
Target:  5'- -aGCgugGAGGCgGUGUUGUGCGccAUGGg -3'
miRNA:   3'- ugCGaa-CUCCGgUACGACGCGU--UGCU- -5'
11896 5' -55.7 NC_003266.2 + 15347 0.68 0.432997
Target:  5'- cGCGCUgGAcuccCCGgauacUGCUGCGCAGCGGc -3'
miRNA:   3'- -UGCGAaCUcc--GGU-----ACGACGCGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 20978 0.68 0.413192
Target:  5'- gGCGUcaUUGAGGCCGUcuacCUGCGCAc--- -3'
miRNA:   3'- -UGCG--AACUCCGGUAc---GACGCGUugcu -5'
11896 5' -55.7 NC_003266.2 + 15796 0.68 0.410269
Target:  5'- gACGCa--GGGCCAUGCUcagggcggccagacGCGCGGCu- -3'
miRNA:   3'- -UGCGaacUCCGGUACGA--------------CGCGUUGcu -5'
11896 5' -55.7 NC_003266.2 + 13050 0.68 0.384558
Target:  5'- cAUGCU--GGGcCCAUGUUGCGC-GCGGu -3'
miRNA:   3'- -UGCGAacUCC-GGUACGACGCGuUGCU- -5'
11896 5' -55.7 NC_003266.2 + 9367 0.69 0.366213
Target:  5'- gGCGCgccgucaccGAGaCCAUGCgacgccgGCGCGGCGAg -3'
miRNA:   3'- -UGCGaa-------CUCcGGUACGa------CGCGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 24755 0.69 0.339845
Target:  5'- aGCGUcucAGGCUgacGCUGCGCAACGGu -3'
miRNA:   3'- -UGCGaacUCCGGua-CGACGCGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 23788 0.71 0.283791
Target:  5'- gGCGCUUGGGGg---GCacGCGCGGCGAg -3'
miRNA:   3'- -UGCGAACUCCgguaCGa-CGCGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 13279 0.72 0.222791
Target:  5'- gGCGCUguccGGCCgcacggGUGCUGCcGCAGCGGu -3'
miRNA:   3'- -UGCGAacu-CCGG------UACGACG-CGUUGCU- -5'
11896 5' -55.7 NC_003266.2 + 20063 1.08 0.00049
Target:  5'- cACGCUUGAGGCCAUGCUGCGCAACGAc -3'
miRNA:   3'- -UGCGAACUCCGGUACGACGCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.