miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11897 5' -59.4 NC_003266.2 + 26340 0.66 0.396064
Target:  5'- -cAGAugGGCC-UGGCCGCcGGCgCCGc -3'
miRNA:   3'- guUCU--UCGGuACCGGCGcCCGaGGCc -5'
11897 5' -59.4 NC_003266.2 + 24607 0.66 0.39515
Target:  5'- -cAGAcAGCCAUGGgCGUGuGGCagcagugUCUGGa -3'
miRNA:   3'- guUCU-UCGGUACCgGCGC-CCG-------AGGCC- -5'
11897 5' -59.4 NC_003266.2 + 10097 0.66 0.386989
Target:  5'- aGAGcGGCCAucgcucggUGGCgG-GGGCgCCGGg -3'
miRNA:   3'- gUUCuUCGGU--------ACCGgCgCCCGaGGCC- -5'
11897 5' -59.4 NC_003266.2 + 16936 0.66 0.378053
Target:  5'- -uAGAAGCgCGU-GCCGCGGuaGC-CCGGc -3'
miRNA:   3'- guUCUUCG-GUAcCGGCGCC--CGaGGCC- -5'
11897 5' -59.4 NC_003266.2 + 20237 0.66 0.360601
Target:  5'- aGAGAcGCCc---UCGCuGGGCUCCGGg -3'
miRNA:   3'- gUUCUuCGGuaccGGCG-CCCGAGGCC- -5'
11897 5' -59.4 NC_003266.2 + 23981 0.67 0.343718
Target:  5'- aAGGAGGCgAUaucaGGUagGCGGGCaCCGGg -3'
miRNA:   3'- gUUCUUCGgUA----CCGg-CGCCCGaGGCC- -5'
11897 5' -59.4 NC_003266.2 + 23868 0.67 0.343718
Target:  5'- gUAGGuGGCCAgGGCCuCGGGCaCCGc -3'
miRNA:   3'- -GUUCuUCGGUaCCGGcGCCCGaGGCc -5'
11897 5' -59.4 NC_003266.2 + 5012 0.67 0.327412
Target:  5'- cCAAaauGcCCAUGGCCGaCGGGCUCa-- -3'
miRNA:   3'- -GUUcuuC-GGUACCGGC-GCCCGAGgcc -5'
11897 5' -59.4 NC_003266.2 + 11440 0.67 0.327412
Target:  5'- ---cGAGCCcgagGGCCGCuGGCuUCUGGa -3'
miRNA:   3'- guucUUCGGua--CCGGCGcCCG-AGGCC- -5'
11897 5' -59.4 NC_003266.2 + 3659 0.67 0.319476
Target:  5'- -cGGAauGGCCAUGGgCGCcGGCUauuaCGGc -3'
miRNA:   3'- guUCU--UCGGUACCgGCGcCCGAg---GCC- -5'
11897 5' -59.4 NC_003266.2 + 18001 0.68 0.281972
Target:  5'- gAGGAGGCaaguccaaGGUCGCGGGCUuacuacucUCGGg -3'
miRNA:   3'- gUUCUUCGgua-----CCGGCGCCCGA--------GGCC- -5'
11897 5' -59.4 NC_003266.2 + 21774 0.69 0.261192
Target:  5'- cCGGGAGGUuucggCAUGGcCCGCGGGCa--GGg -3'
miRNA:   3'- -GUUCUUCG-----GUACC-GGCGCCCGaggCC- -5'
11897 5' -59.4 NC_003266.2 + 18008 0.69 0.248044
Target:  5'- -cGGuGGCCGUGGcCCGCGcGCgaCCGGg -3'
miRNA:   3'- guUCuUCGGUACC-GGCGCcCGa-GGCC- -5'
11897 5' -59.4 NC_003266.2 + 12317 0.7 0.223393
Target:  5'- --cGAAGCCGUGGCCcagcGCGaacGGUUCCa- -3'
miRNA:   3'- guuCUUCGGUACCGG----CGC---CCGAGGcc -5'
11897 5' -59.4 NC_003266.2 + 11499 0.7 0.206297
Target:  5'- -cAGAAGCCAgcGGCCcuCGGGCUCgGu -3'
miRNA:   3'- guUCUUCGGUa-CCGGc-GCCCGAGgCc -5'
11897 5' -59.4 NC_003266.2 + 15916 0.7 0.195539
Target:  5'- --cGccGCCGUGGCCGCGcGuCUCCGa -3'
miRNA:   3'- guuCuuCGGUACCGGCGCcC-GAGGCc -5'
11897 5' -59.4 NC_003266.2 + 19000 0.75 0.089607
Target:  5'- -uAGGAGUgGUGGCgGCGGGUUCUGa -3'
miRNA:   3'- guUCUUCGgUACCGgCGCCCGAGGCc -5'
11897 5' -59.4 NC_003266.2 + 23011 0.76 0.077617
Target:  5'- gGAGGAGCUGgcGGCCGUGGGCUUCa- -3'
miRNA:   3'- gUUCUUCGGUa-CCGGCGCCCGAGGcc -5'
11897 5' -59.4 NC_003266.2 + 21051 1.09 0.000239
Target:  5'- gCAAGAAGCCAUGGCCGCGGGCUCCGGc -3'
miRNA:   3'- -GUUCUUCGGUACCGGCGCCCGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.