Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11898 | 3' | -60.8 | NC_003266.2 | + | 22316 | 1.1 | 0.000137 |
Target: 5'- aGCGCACCCGGCGUCGUGCACGCAGCAg -3' miRNA: 3'- -CGCGUGGGCCGCAGCACGUGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 10940 | 0.76 | 0.057786 |
Target: 5'- gGCGCGCCUgggGGCGUCGUcGCcggaGCGGCAc -3' miRNA: 3'- -CGCGUGGG---CCGCAGCA-CGug--CGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 17075 | 0.73 | 0.108268 |
Target: 5'- aGCGCGCCCgcGGCaggGUCagagGCGCGCGGCc -3' miRNA: 3'- -CGCGUGGG--CCG---CAGca--CGUGCGUCGu -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15995 | 0.72 | 0.12452 |
Target: 5'- cGCGCACaccgguggCGGCGUCGcGCACcCAGUAc -3' miRNA: 3'- -CGCGUGg-------GCCGCAGCaCGUGcGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 6536 | 0.7 | 0.159575 |
Target: 5'- aGCGCGCgCUGGC--CGUGCGCGaauGGCAa -3' miRNA: 3'- -CGCGUG-GGCCGcaGCACGUGCg--UCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 9880 | 0.7 | 0.163979 |
Target: 5'- aGCGCgucgucgcugACCUGGCGcUCGUccaGC-CGCAGCGc -3' miRNA: 3'- -CGCG----------UGGGCCGC-AGCA---CGuGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15718 | 0.7 | 0.182213 |
Target: 5'- gGCGCaucGCCCGGCGgcacCGUaGCACcaccgccaugcguGCGGCGc -3' miRNA: 3'- -CGCG---UGGGCCGCa---GCA-CGUG-------------CGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 19905 | 0.7 | 0.182703 |
Target: 5'- gGgGCACCUGGaUGUgGaaugGCACGUAGCGc -3' miRNA: 3'- -CgCGUGGGCC-GCAgCa---CGUGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 5253 | 0.68 | 0.220032 |
Target: 5'- gGCGC-CCUGuGCGUCG-GCcAgGUAGCAa -3' miRNA: 3'- -CGCGuGGGC-CGCAGCaCG-UgCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 9325 | 0.68 | 0.220032 |
Target: 5'- gGCGCGCCCGuCcUCGcggGguCGCAGCGu -3' miRNA: 3'- -CGCGUGGGCcGcAGCa--CguGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15934 | 0.68 | 0.244165 |
Target: 5'- uGCGCGacgccgccaCCGGUGUgcgCGUGCcCGUGGCAc -3' miRNA: 3'- -CGCGUg--------GGCCGCA---GCACGuGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15498 | 0.67 | 0.257035 |
Target: 5'- aCGCAacacCCCGuGCG-CGUGCGCG-GGCAc -3' miRNA: 3'- cGCGU----GGGC-CGCaGCACGUGCgUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 16283 | 0.67 | 0.263676 |
Target: 5'- uCGCGCCUGGCGagCGguccgGCACGacauccaAGCGc -3' miRNA: 3'- cGCGUGGGCCGCa-GCa----CGUGCg------UCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 23198 | 0.67 | 0.270456 |
Target: 5'- uCGCgGCCCGGCGggugGCugGCAGa- -3' miRNA: 3'- cGCG-UGGGCCGCagcaCGugCGUCgu -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 10120 | 0.67 | 0.291636 |
Target: 5'- gGgGCGCCgGGCGcuagguccUCGaGCAUGguGCGg -3' miRNA: 3'- -CgCGUGGgCCGC--------AGCaCGUGCguCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 18324 | 0.66 | 0.304203 |
Target: 5'- aGCGUccugUCCGGCGaUGUGCAUguacgcccacugggGCAGCAu -3' miRNA: 3'- -CGCGu---GGGCCGCaGCACGUG--------------CGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 11248 | 0.66 | 0.305709 |
Target: 5'- aCGCcgugaccagguugGCCgCGGCcaCGUGCGCGCGcGCAg -3' miRNA: 3'- cGCG-------------UGG-GCCGcaGCACGUGCGU-CGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 13813 | 0.66 | 0.316408 |
Target: 5'- uGCGUACCCGGaggguccuccucccuCGUacgagagCGUG-AUGCAGCAg -3' miRNA: 3'- -CGCGUGGGCC---------------GCA-------GCACgUGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15846 | 0.66 | 0.321862 |
Target: 5'- -aGCaugGCCCuGCGUccCGUGCgccuggcccuGCGCAGCAa -3' miRNA: 3'- cgCG---UGGGcCGCA--GCACG----------UGCGUCGU- -5' |
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11898 | 3' | -60.8 | NC_003266.2 | + | 15864 | 0.66 | 0.329775 |
Target: 5'- cGCGCgGCCaCGGCGgCG-GCA-GCGGCc -3' miRNA: 3'- -CGCG-UGG-GCCGCaGCaCGUgCGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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