Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11898 | 5' | -55.7 | NC_003266.2 | + | 20503 | 0.66 | 0.542708 |
Target: 5'- ---cUUGGUCAuGUUGCacuggGCCACGUUGUa -3' miRNA: 3'- caacAACCGGU-CGACG-----UGGUGCGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 22581 | 0.66 | 0.505123 |
Target: 5'- -cUG-UGGCUgcacGGCUGUACCGaagucgagggcaaGCUGCg -3' miRNA: 3'- caACaACCGG----UCGACGUGGUg------------CGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 21401 | 0.66 | 0.498604 |
Target: 5'- cUUGgUGGCCAGg-GCGCUgcgGCGCaGCa -3' miRNA: 3'- cAACaACCGGUCgaCGUGG---UGCGaCG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 23749 | 0.66 | 0.498604 |
Target: 5'- --cGUaGGCgCGGCUGagcuccuCCACGCUGa -3' miRNA: 3'- caaCAaCCG-GUCGACgu-----GGUGCGACg -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 3810 | 0.66 | 0.528217 |
Target: 5'- ----gUGGCuCAGCUGCaggagcagacgcggGCCGCgGUUGCc -3' miRNA: 3'- caacaACCG-GUCGACG--------------UGGUG-CGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 24513 | 0.67 | 0.477154 |
Target: 5'- --gGUUGGUCAGCU---CCACGUUGg -3' miRNA: 3'- caaCAACCGGUCGAcguGGUGCGACg -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 11443 | 0.67 | 0.466602 |
Target: 5'- --cGUUGuCCcgacuguGCUGCACCACcaggaacaGCUGCg -3' miRNA: 3'- caaCAACcGGu------CGACGUGGUG--------CGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 9755 | 0.67 | 0.435694 |
Target: 5'- ----cUGGCCAGgUGUcaggACCACGCcugggGCa -3' miRNA: 3'- caacaACCGGUCgACG----UGGUGCGa----CG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 11236 | 0.68 | 0.415759 |
Target: 5'- --gGUUGGCCgcGGCcacgUGCGCgCGCGCaggGCu -3' miRNA: 3'- caaCAACCGG--UCG----ACGUG-GUGCGa--CG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 33820 | 0.69 | 0.359447 |
Target: 5'- -aUGUUGGCaCAGCacagGCA-CACGCUcauGCa -3' miRNA: 3'- caACAACCG-GUCGa---CGUgGUGCGA---CG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 26608 | 0.69 | 0.359447 |
Target: 5'- -gUGUccagcUGGCgGGCgGCGCCACcCUGUg -3' miRNA: 3'- caACA-----ACCGgUCGaCGUGGUGcGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 16823 | 0.69 | 0.358554 |
Target: 5'- -----cGGCCAGcCUGCugauGCCcaacuacGCGCUGCa -3' miRNA: 3'- caacaaCCGGUC-GACG----UGG-------UGCGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 3604 | 0.69 | 0.341898 |
Target: 5'- --cGUcggUGGaCgCAGCUGcCGCCGCaGCUGCu -3' miRNA: 3'- caaCA---ACC-G-GUCGAC-GUGGUG-CGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 14961 | 0.71 | 0.24978 |
Target: 5'- aGUUGUaGGCCAG--GUACCA-GCUGCg -3' miRNA: 3'- -CAACAaCCGGUCgaCGUGGUgCGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 24853 | 0.74 | 0.155327 |
Target: 5'- -cUGccGGCCAcCUGCuCCGCGCUGCc -3' miRNA: 3'- caACaaCCGGUcGACGuGGUGCGACG- -5' |
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11898 | 5' | -55.7 | NC_003266.2 | + | 22351 | 1.12 | 0.000222 |
Target: 5'- cGUUGUUGGCCAGCUGCACCACGCUGCg -3' miRNA: 3'- -CAACAACCGGUCGACGUGGUGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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