miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11899 5' -51.6 NC_003266.2 + 34782 0.66 0.791098
Target:  5'- cCGGU---GGAggGCGCucUGCGCGAGCu -3'
miRNA:   3'- -GCUAgacCCUuaCGCGu-ACGUGCUUG- -5'
11899 5' -51.6 NC_003266.2 + 4213 0.66 0.780587
Target:  5'- uGAgCUGGGAggGaUGCAUGCGgGGGg -3'
miRNA:   3'- gCUaGACCCUuaC-GCGUACGUgCUUg -5'
11899 5' -51.6 NC_003266.2 + 18081 0.66 0.769902
Target:  5'- gGGUCUGGGAGUGCagaGUGUGa-AGCg -3'
miRNA:   3'- gCUAGACCCUUACGcg-UACGUgcUUG- -5'
11899 5' -51.6 NC_003266.2 + 17290 0.66 0.759056
Target:  5'- gCGAUgaUGGGGAUcaGCGCggGCAgGAAg -3'
miRNA:   3'- -GCUAg-ACCCUUA--CGCGuaCGUgCUUg -5'
11899 5' -51.6 NC_003266.2 + 23233 0.67 0.72569
Target:  5'- gCGAUC-GGGggUGCGCucccggcgGCGCu--- -3'
miRNA:   3'- -GCUAGaCCCuuACGCGua------CGUGcuug -5'
11899 5' -51.6 NC_003266.2 + 12600 0.67 0.72569
Target:  5'- cCGGUCgGGGAccGCGCGacgGUGuCGAGCc -3'
miRNA:   3'- -GCUAGaCCCUuaCGCGUa--CGU-GCUUG- -5'
11899 5' -51.6 NC_003266.2 + 16021 0.68 0.656471
Target:  5'- gCGAgg-GGGGcggGUGCGCAcggGCACGcGCa -3'
miRNA:   3'- -GCUagaCCCU---UACGCGUa--CGUGCuUG- -5'
11899 5' -51.6 NC_003266.2 + 22607 0.68 0.643598
Target:  5'- aGAaCUGGGAgagcacgggGUGCGCGcuguggcUGCACGGc- -3'
miRNA:   3'- gCUaGACCCU---------UACGCGU-------ACGUGCUug -5'
11899 5' -51.6 NC_003266.2 + 11673 0.7 0.55165
Target:  5'- aCGAUCUGGGggUGUaccGCAacgacaggaUGCGcCGcGCg -3'
miRNA:   3'- -GCUAGACCCuuACG---CGU---------ACGU-GCuUG- -5'
11899 5' -51.6 NC_003266.2 + 9839 0.73 0.391943
Target:  5'- gGGUUUGGGcucacGCGUAUGCACGGccGCg -3'
miRNA:   3'- gCUAGACCCuua--CGCGUACGUGCU--UG- -5'
11899 5' -51.6 NC_003266.2 + 22578 1.09 0.001208
Target:  5'- gCGAUCUGGGAAUGCGCAUGCACGAACc -3'
miRNA:   3'- -GCUAGACCCUUACGCGUACGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.