miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
119 5' -61.6 AC_000006.1 + 4779 0.66 0.290327
Target:  5'- gUCCCGGAgGAGgggggccacCUCGuuGAgcaugucucuaacuuGGAGGUn -3'
miRNA:   3'- aAGGGCCUgCUC---------GAGCggCU---------------CCUCCG- -5'
119 5' -61.6 AC_000006.1 + 6437 0.66 0.287447
Target:  5'- cUCgCGGGCGGccauuGCUCGCUcguagggguuGAGG-GGCg -3'
miRNA:   3'- aAGgGCCUGCU-----CGAGCGG----------CUCCuCCG- -5'
119 5' -61.6 AC_000006.1 + 17586 0.67 0.259873
Target:  5'- -cUUCGGugGAGCgggCGUgGGugguGGAGGCa -3'
miRNA:   3'- aaGGGCCugCUCGa--GCGgCU----CCUCCG- -5'
119 5' -61.6 AC_000006.1 + 26242 0.67 0.240637
Target:  5'- cUCCCGGGCGaAGCagCGCaGGcGGcGGCa -3'
miRNA:   3'- aAGGGCCUGC-UCGa-GCGgCU-CCuCCG- -5'
119 5' -61.6 AC_000006.1 + 9018 0.68 0.216854
Target:  5'- --gCCuGAUGAGCUCGgCGAuGGuGGCg -3'
miRNA:   3'- aagGGcCUGCUCGAGCgGCU-CCuCCG- -5'
119 5' -61.6 AC_000006.1 + 8092 0.69 0.186961
Target:  5'- cUCCCGcGCGGGCUCGUcagccucuccguccuCGAGGAGc- -3'
miRNA:   3'- aAGGGCcUGCUCGAGCG---------------GCUCCUCcg -5'
119 5' -61.6 AC_000006.1 + 26141 0.69 0.180077
Target:  5'- -aCUCGGcUGAGCUCGCuCGGuuGAGGCa -3'
miRNA:   3'- aaGGGCCuGCUCGAGCG-GCUc-CUCCG- -5'
119 5' -61.6 AC_000006.1 + 14191 0.69 0.170634
Target:  5'- -aCCCGGACGugguGCUgcUGCCGGGcugcGGGGUg -3'
miRNA:   3'- aaGGGCCUGCu---CGA--GCGGCUC----CUCCG- -5'
119 5' -61.6 AC_000006.1 + 10704 0.7 0.140985
Target:  5'- -gCCgCGGucGCGGuGgUCGCCGGGGGGGUg -3'
miRNA:   3'- aaGG-GCC--UGCU-CgAGCGGCUCCUCCG- -5'
119 5' -61.6 AC_000006.1 + 12669 0.7 0.137155
Target:  5'- aUCCCGGcgcaguACGcGCUgucgGCCGAGGAGGa -3'
miRNA:   3'- aAGGGCC------UGCuCGAg---CGGCUCCUCCg -5'
119 5' -61.6 AC_000006.1 + 17406 0.75 0.062017
Target:  5'- aUCCUgcagguGGACGAGC-CGCCuucguacGAGGAGGCc -3'
miRNA:   3'- aAGGG------CCUGCUCGaGCGG-------CUCCUCCG- -5'
119 5' -61.6 AC_000006.1 + 26331 0.8 0.026769
Target:  5'- cUUCCUGGuCGAGCggGaCCGGGGAGGCa -3'
miRNA:   3'- -AAGGGCCuGCUCGagC-GGCUCCUCCG- -5'
119 5' -61.6 AC_000006.1 + 4829 1.09 0.000129
Target:  5'- uUUCCCGGACGAGCUCGCCGAGGAGGCg -3'
miRNA:   3'- -AAGGGCCUGCUCGAGCGGCUCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.