miRNA: 3'- gGCCCUACCUAGCuug--CGCAGa--GCGu -5'
miRNA: 3'- -GGCCCUaCCUAGCUu-------GCGCAGa-GCGu -5'
miRNA: 3'- -GGCCCUACCUAGCUUGCGCAGAGCGU- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1190 | 3' | -55.1 | NC_001132.2 | + | 42703 | 0.68 | 0.897864 |
|
Target: 5'- gUGGGAUGGAUCGcgggaGCGUCcacCGUu -3' miRNA: 3'- gGCCCUACCUAGCuug--CGCAGa--GCGu -5' |
|||||||
| 1190 | 3' | -55.1 | NC_001132.2 | + | 9813 | 0.7 | 0.83178 |
|
Target: 5'- cCUGGGA-GGAUCGAugaaagguCGCGUCacCGCc -3' miRNA: 3'- -GGCCCUaCCUAGCUu-------GCGCAGa-GCGu -5' |
|||||||
| 1190 | 3' | -55.1 | NC_001132.2 | + | 151151 | 1.1 | 0.003823 |
|
Target: 5'- cCCGGGAUGGAUCGAACGCGUCUCGCAc -3' miRNA: 3'- -GGCCCUACCUAGCUUGCGCAGAGCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home