Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11900 | 5' | -58.2 | NC_003266.2 | + | 6399 | 0.66 | 0.39439 |
Target: 5'- cUGCCccccuuCUGCuCGCgcaaggGCGgccGCCUCUGCu -3' miRNA: 3'- cACGGu-----GACG-GCGa-----CGU---UGGAGACGu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 22589 | 0.66 | 0.366839 |
Target: 5'- gGUGCgCGCUGUgGCUGCAcggcuguACCgaagucgagggcaagCUGCGg -3' miRNA: 3'- -CACG-GUGACGgCGACGU-------UGGa--------------GACGU- -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 30364 | 0.66 | 0.370435 |
Target: 5'- uUGCCuucaucaccugcauCUGCUGCUGUAGCauagUCUGCc -3' miRNA: 3'- cACGGu-------------GACGGCGACGUUGg---AGACGu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 14828 | 0.67 | 0.344055 |
Target: 5'- -cGCCACUGCUGCggcgcuaGCAaaauuaucgccccggACCUCgGUAg -3' miRNA: 3'- caCGGUGACGGCGa------CGU---------------UGGAGaCGU- -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 24908 | 0.68 | 0.300053 |
Target: 5'- aGUGCCcCccGCCGCUGUggAGCCaCUGCu -3' miRNA: 3'- -CACGGuGa-CGGCGACG--UUGGaGACGu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 15925 | 0.68 | 0.300054 |
Target: 5'- -gGCCGCUGCCGCcGCcguGGCCgc-GCGu -3' miRNA: 3'- caCGGUGACGGCGaCG---UUGGagaCGU- -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 28667 | 0.68 | 0.284897 |
Target: 5'- -aGaCCACUgcgcuguguggGCCGCUGauuACCUUUGCAa -3' miRNA: 3'- caC-GGUGA-----------CGGCGACgu-UGGAGACGU- -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 17001 | 0.69 | 0.230299 |
Target: 5'- -cGCCGCgGCCGC-GCG-CCUCUGa- -3' miRNA: 3'- caCGGUGaCGGCGaCGUuGGAGACgu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 26020 | 0.7 | 0.218105 |
Target: 5'- -aGuCCACUGCCGCcGCcGCCgCUGUg -3' miRNA: 3'- caC-GGUGACGGCGaCGuUGGaGACGu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 3619 | 0.71 | 0.160555 |
Target: 5'- cUGCCGCcGCaGCUGCuGCUUCUGCc -3' miRNA: 3'- cACGGUGaCGgCGACGuUGGAGACGu -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 13917 | 0.72 | 0.156064 |
Target: 5'- -cGCCGCcGCCGCcGCcauuGCCUgCUGCAu -3' miRNA: 3'- caCGGUGaCGGCGaCGu---UGGA-GACGU- -5' |
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11900 | 5' | -58.2 | NC_003266.2 | + | 25012 | 1.08 | 0.000254 |
Target: 5'- aGUGCCACUGCCGCUGCAACCUCUGCAc -3' miRNA: 3'- -CACGGUGACGGCGACGUUGGAGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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