Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11901 | 3' | -60 | NC_003266.2 | + | 25405 | 1.13 | 0.000102 |
Target: 5'- uCCCCCAGGAUGCCCCGAGGAAGCAGCa -3' miRNA: 3'- -GGGGGUCCUACGGGGCUCCUUCGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 27103 | 0.74 | 0.098252 |
Target: 5'- -aCUCGGcGAgGUCCCGAGcGAAGCAGCg -3' miRNA: 3'- ggGGGUC-CUaCGGGGCUC-CUUCGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 17826 | 0.72 | 0.153493 |
Target: 5'- gCCCCGcu-UGUCCaGGGGAGGCAGCu -3' miRNA: 3'- gGGGGUccuACGGGgCUCCUUCGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 24212 | 0.71 | 0.175868 |
Target: 5'- aCCCCGaGA-GCUCCGAGGAGGgcaAGCc -3' miRNA: 3'- gGGGGUcCUaCGGGGCUCCUUCg--UCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 15592 | 0.71 | 0.180678 |
Target: 5'- gCCCUugAGGgcGCCCC-AGGGAGC-GCg -3' miRNA: 3'- gGGGG--UCCuaCGGGGcUCCUUCGuCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 23341 | 0.7 | 0.197913 |
Target: 5'- uUCCCUAGGAgaacacaauggccgGCCgCgGAGGAAGuCAGUu -3' miRNA: 3'- -GGGGGUCCUa-------------CGG-GgCUCCUUC-GUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 9371 | 0.7 | 0.206509 |
Target: 5'- aUCUCCAGG-UGgCCCGGGGGguccccguugGGCAGg -3' miRNA: 3'- -GGGGGUCCuACgGGGCUCCU----------UCGUCg -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 23293 | 0.69 | 0.223497 |
Target: 5'- gCCgCCGGGAgcgcacCCCCGAucgcGGAAGgGGCu -3' miRNA: 3'- -GGgGGUCCUac----GGGGCU----CCUUCgUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 9201 | 0.69 | 0.247981 |
Target: 5'- aCUCCCGGGA-GCCuUCGAGcGcGAGguGCg -3' miRNA: 3'- -GGGGGUCCUaCGG-GGCUC-C-UUCguCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 27141 | 0.69 | 0.247981 |
Target: 5'- gCCCUgAGGGUGCUCCucGGA--CAGCu -3' miRNA: 3'- -GGGGgUCCUACGGGGcuCCUucGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 4624 | 0.68 | 0.261035 |
Target: 5'- uCUCCCAGGccuuaaGCUCCGAGGggGgGa- -3' miRNA: 3'- -GGGGGUCCua----CGGGGCUCCuuCgUcg -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 25202 | 0.68 | 0.274642 |
Target: 5'- gCCCCGGGGUGaguuucagaccCCCCuuGGcGGCAGa -3' miRNA: 3'- gGGGGUCCUAC-----------GGGGcuCCuUCGUCg -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 12878 | 0.68 | 0.288812 |
Target: 5'- gCCCCAGuacgcgcuGA-GCgCCGAGGAGG-AGCg -3' miRNA: 3'- gGGGGUC--------CUaCGgGGCUCCUUCgUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 21151 | 0.67 | 0.29611 |
Target: 5'- uUCCCGGGAUucaugGCCCCGcacaAGGuGGCcuGCg -3' miRNA: 3'- gGGGGUCCUA-----CGGGGC----UCCuUCGu-CG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 21195 | 0.67 | 0.329916 |
Target: 5'- aUCCCGGGAaucgcuuaucgaaggUGCCC--AGGAAGUAGg -3' miRNA: 3'- gGGGGUCCU---------------ACGGGgcUCCUUCGUCg -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 13212 | 0.67 | 0.334741 |
Target: 5'- cCCCCCGaccGGGUgcuaacgagcGCCCCuuguGGAagaaagagGGCAGCg -3' miRNA: 3'- -GGGGGU---CCUA----------CGGGGcu--CCU--------UCGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 17315 | 0.66 | 0.342896 |
Target: 5'- -gCCgGGGAUcGCCCCGAucGccGCGGCg -3' miRNA: 3'- ggGGgUCCUA-CGGGGCUc-CuuCGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 21150 | 0.66 | 0.347027 |
Target: 5'- aCCCCAGGucgcggaugaugGCCCUGAgcuccugcucgccGGAGcccGCGGCc -3' miRNA: 3'- gGGGGUCCua----------CGGGGCU-------------CCUU---CGUCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 12165 | 0.66 | 0.351193 |
Target: 5'- gCCUCCAGGAUGgCCgaGAGccgguuggccuGggGCuGCu -3' miRNA: 3'- -GGGGGUCCUACgGGg-CUC-----------CuuCGuCG- -5' |
|||||||
11901 | 3' | -60 | NC_003266.2 | + | 7401 | 0.66 | 0.368212 |
Target: 5'- aCCgCGGGcgGCCCuUGAcGuGggGCAGUu -3' miRNA: 3'- gGGgGUCCuaCGGG-GCU-C-CuuCGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home