miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11902 5' -56 NC_003266.2 + 21978 0.66 0.540624
Target:  5'- -aGAUcUCCGCGCCCgACCu--GCUGGg -3'
miRNA:   3'- uaCUGuAGGCGCGGG-UGGcuuUGGUC- -5'
11902 5' -56 NC_003266.2 + 8908 0.66 0.518672
Target:  5'- gGUGGuCAUgCGCGCCCGcgaucCCGAGggcGCCGu -3'
miRNA:   3'- -UACU-GUAgGCGCGGGU-----GGCUU---UGGUc -5'
11902 5' -56 NC_003266.2 + 10868 0.66 0.518672
Target:  5'- --uACcgCCGCGgCCGCCGugagcgGGGCCGGg -3'
miRNA:   3'- uacUGuaGGCGCgGGUGGC------UUUGGUC- -5'
11902 5' -56 NC_003266.2 + 18531 0.67 0.486439
Target:  5'- uUGACAUCCGCGgCgUGCUG-GAUCGGg -3'
miRNA:   3'- uACUGUAGGCGC-GgGUGGCuUUGGUC- -5'
11902 5' -56 NC_003266.2 + 20816 0.68 0.434967
Target:  5'- cAUGucCAUgggCGCGCUCACCGAccucGGCCAGa -3'
miRNA:   3'- -UACu-GUAg--GCGCGGGUGGCU----UUGGUC- -5'
11902 5' -56 NC_003266.2 + 5423 0.68 0.425053
Target:  5'- -aGGCGUCCGCGCCgCAgUGG-GCgCAGa -3'
miRNA:   3'- uaCUGUAGGCGCGG-GUgGCUuUG-GUC- -5'
11902 5' -56 NC_003266.2 + 5568 0.68 0.39614
Target:  5'- gGUGACAaagaggcugUCCGUGUCC-CCGuAAACCGa -3'
miRNA:   3'- -UACUGU---------AGGCGCGGGuGGC-UUUGGUc -5'
11902 5' -56 NC_003266.2 + 15130 0.68 0.39614
Target:  5'- cAUGAgcUCgGCGCCCACC---ACCGGg -3'
miRNA:   3'- -UACUguAGgCGCGGGUGGcuuUGGUC- -5'
11902 5' -56 NC_003266.2 + 31593 0.7 0.317374
Target:  5'- uGUGGaggaaGUuuGCaGCCCGCCGggGCCu- -3'
miRNA:   3'- -UACUg----UAggCG-CGGGUGGCuuUGGuc -5'
11902 5' -56 NC_003266.2 + 3659 0.71 0.264684
Target:  5'- -cGGCAgCUGCGUCCACCGAcgaggAGCuCAGg -3'
miRNA:   3'- uaCUGUaGGCGCGGGUGGCU-----UUG-GUC- -5'
11902 5' -56 NC_003266.2 + 5490 0.73 0.201989
Target:  5'- -aGAcCGUCUGCGCCCACUGcgGCgCGGa -3'
miRNA:   3'- uaCU-GUAGGCGCGGGUGGCuuUG-GUC- -5'
11902 5' -56 NC_003266.2 + 9372 0.75 0.152603
Target:  5'- -gGACGggCGCGCCguCACCGAGACCAu -3'
miRNA:   3'- uaCUGUagGCGCGG--GUGGCUUUGGUc -5'
11902 5' -56 NC_003266.2 + 33481 0.76 0.128492
Target:  5'- aGUGAgAUCCgcauccgcugcuGCGCCCGCCGu-ACCAGg -3'
miRNA:   3'- -UACUgUAGG------------CGCGGGUGGCuuUGGUC- -5'
11902 5' -56 NC_003266.2 + 26427 1.07 0.000612
Target:  5'- aAUGACAUCCGCGCCCACCGAAACCAGa -3'
miRNA:   3'- -UACUGUAGGCGCGGGUGGCUUUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.