miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11903 3' -59.9 NC_003266.2 + 25467 0.66 0.369257
Target:  5'- uGCUGCuuccUCGGGGCaUCCUgGGggaaGCCGg -3'
miRNA:   3'- -CGACGu---GGUCCCG-AGGGgUUag--CGGC- -5'
11903 3' -59.9 NC_003266.2 + 17256 0.66 0.360601
Target:  5'- cGCgGCgAUCGGGGCgaUCCCCGgcAUUGCUu -3'
miRNA:   3'- -CGaCG-UGGUCCCG--AGGGGU--UAGCGGc -5'
11903 3' -59.9 NC_003266.2 + 21509 0.66 0.348723
Target:  5'- uGCUG-ACgGGGGUgcccaacggcaugCUCCAGUCGCCc -3'
miRNA:   3'- -CGACgUGgUCCCGa------------GGGGUUAGCGGc -5'
11903 3' -59.9 NC_003266.2 + 12180 0.66 0.343718
Target:  5'- cGCgaggGCACCAcGGC-CUCCAggAUgGCCGa -3'
miRNA:   3'- -CGa---CGUGGUcCCGaGGGGU--UAgCGGC- -5'
11903 3' -59.9 NC_003266.2 + 28173 0.66 0.327412
Target:  5'- cGgUGUACCAcucGGGgUCCCCGGgcuGCCa -3'
miRNA:   3'- -CgACGUGGU---CCCgAGGGGUUag-CGGc -5'
11903 3' -59.9 NC_003266.2 + 11827 0.67 0.311686
Target:  5'- cCUGCACU--GGCagCCCAGcCGCCGg -3'
miRNA:   3'- cGACGUGGucCCGagGGGUUaGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 4964 0.67 0.311686
Target:  5'- --cGCuCCAGGaGCUCCUC--UCGCUGg -3'
miRNA:   3'- cgaCGuGGUCC-CGAGGGGuuAGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 11217 0.67 0.30404
Target:  5'- cGC-GCGCgCAGGGCugaUCCCCGucagcUCGuCCGc -3'
miRNA:   3'- -CGaCGUG-GUCCCG---AGGGGUu----AGC-GGC- -5'
11903 3' -59.9 NC_003266.2 + 6738 0.67 0.30404
Target:  5'- aGCcGCGCCAaucucggagccGGGCUCCUCGcccccUCGCaCGa -3'
miRNA:   3'- -CGaCGUGGU-----------CCCGAGGGGUu----AGCG-GC- -5'
11903 3' -59.9 NC_003266.2 + 11109 0.67 0.303284
Target:  5'- gGCUGCGCgCAucuccucGGGCUCC----UCGCCGc -3'
miRNA:   3'- -CGACGUG-GU-------CCCGAGGgguuAGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 18096 0.68 0.267977
Target:  5'- uCUGCcaguucGCCugAGGGCgagcCCCCGGUCGCgCGc -3'
miRNA:   3'- cGACG------UGG--UCCCGa---GGGGUUAGCG-GC- -5'
11903 3' -59.9 NC_003266.2 + 16442 0.69 0.229353
Target:  5'- cGCUGgACCAcGGCaaCCCCA--CGCCGa -3'
miRNA:   3'- -CGACgUGGUcCCGa-GGGGUuaGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 23296 0.69 0.211867
Target:  5'- aGC-GcCGCCGGGaGCgcacCCCCGAUCGCgGa -3'
miRNA:   3'- -CGaC-GUGGUCC-CGa---GGGGUUAGCGgC- -5'
11903 3' -59.9 NC_003266.2 + 16850 0.72 0.136945
Target:  5'- cUUGCGCCGGGGUUUUCgGggCGCCGc -3'
miRNA:   3'- cGACGUGGUCCCGAGGGgUuaGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 20685 0.74 0.092208
Target:  5'- -aUGCGCCAGGGCcagCCCUAcccCGCCa -3'
miRNA:   3'- cgACGUGGUCCCGa--GGGGUua-GCGGc -5'
11903 3' -59.9 NC_003266.2 + 17321 0.76 0.073264
Target:  5'- --aGCaauGCCGGGGaucgCCCCGAUCGCCGc -3'
miRNA:   3'- cgaCG---UGGUCCCga--GGGGUUAGCGGC- -5'
11903 3' -59.9 NC_003266.2 + 27418 1.09 0.000177
Target:  5'- gGCUGCACCAGGGCUCCCCAAUCGCCGu -3'
miRNA:   3'- -CGACGUGGUCCCGAGGGGUUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.