miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11904 3' -57.9 NC_003266.2 + 29802 1.09 0.000266
Target:  5'- cUCAGCCCACCGCCACCACAACAGCAGa -3'
miRNA:   3'- -AGUCGGGUGGCGGUGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 23122 0.84 0.023012
Target:  5'- cUCAGgaacaaCCACCGCCGCCGCAGCAGCc- -3'
miRNA:   3'- -AGUCg-----GGUGGCGGUGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 14843 0.84 0.02372
Target:  5'- aUCAGCCUugGCCGCCGCCACugcuGCGGCGc -3'
miRNA:   3'- -AGUCGGG--UGGCGGUGGUGu---UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 10772 0.78 0.063655
Target:  5'- gCAGaugcgccCCCACCcuCCACCGCAACAGCAGc -3'
miRNA:   3'- aGUC-------GGGUGGc-GGUGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 26023 0.77 0.069771
Target:  5'- cUCAGUCCACUGCCGCCGCcGCcGCu- -3'
miRNA:   3'- -AGUCGGGUGGCGGUGGUGuUGuCGuc -5'
11904 3' -57.9 NC_003266.2 + 23350 0.76 0.090887
Target:  5'- aUCuGCCCccACCGCCgACaagaaGCAGCAGCAGa -3'
miRNA:   3'- -AGuCGGG--UGGCGG-UGg----UGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 11836 0.75 0.10211
Target:  5'- gCAGCCCAgCCGCCgggucuuggaaGCCGCGGCGGUc- -3'
miRNA:   3'- aGUCGGGU-GGCGG-----------UGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 30794 0.75 0.103302
Target:  5'- -uGGCUC-CCGCCugaucccgacacaccACCACAGCAGCAGc -3'
miRNA:   3'- agUCGGGuGGCGG---------------UGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 18059 0.75 0.1082
Target:  5'- gCGGgCCACgGCCACCG--GCGGCAGg -3'
miRNA:   3'- aGUCgGGUGgCGGUGGUguUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 10932 0.74 0.128571
Target:  5'- cCGGCCCcgcucACgGCgGCCGCGGCGGUAGu -3'
miRNA:   3'- aGUCGGG-----UGgCGgUGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 27993 0.73 0.136116
Target:  5'- aUCGGCCUucuCCGUCACUACAGCcGCGc -3'
miRNA:   3'- -AGUCGGGu--GGCGGUGGUGUUGuCGUc -5'
11904 3' -57.9 NC_003266.2 + 11165 0.72 0.165826
Target:  5'- aUCAGCCCugCGCgCGCgCACGugGccGCGGc -3'
miRNA:   3'- -AGUCGGGugGCG-GUG-GUGUugU--CGUC- -5'
11904 3' -57.9 NC_003266.2 + 10860 0.72 0.170518
Target:  5'- cCAGCcacuaCCGCCGCgGCCGcCGugAGCGGg -3'
miRNA:   3'- aGUCG-----GGUGGCGgUGGU-GUugUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 14194 0.71 0.19049
Target:  5'- uUCAGCUgACCGCC-CCACcGCgAGCGc -3'
miRNA:   3'- -AGUCGGgUGGCGGuGGUGuUG-UCGUc -5'
11904 3' -57.9 NC_003266.2 + 15856 0.71 0.201228
Target:  5'- cUCGGagaCgCGCgGCCACgGCGGCGGCAGc -3'
miRNA:   3'- -AGUCg--G-GUGgCGGUGgUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 9724 0.71 0.206792
Target:  5'- -uGGCCgACCGUCugCGCAucCAGCAa -3'
miRNA:   3'- agUCGGgUGGCGGugGUGUu-GUCGUc -5'
11904 3' -57.9 NC_003266.2 + 8102 0.7 0.224285
Target:  5'- -gGGCCagGCCGaCCACCACGAC-GUAGu -3'
miRNA:   3'- agUCGGg-UGGC-GGUGGUGUUGuCGUC- -5'
11904 3' -57.9 NC_003266.2 + 18940 0.7 0.229158
Target:  5'- uUCAGaaCCCGCCGCCACCACucuaacuaugauauaGaccuggcuuucuuugACAGCAa -3'
miRNA:   3'- -AGUC--GGGUGGCGGUGGUG---------------U---------------UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 10831 0.7 0.23039
Target:  5'- uUCuGCCU-CCGCC-CCAgCAGCAGCAa -3'
miRNA:   3'- -AGuCGGGuGGCGGuGGU-GUUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 24551 0.7 0.236634
Target:  5'- -aGGCCCGCCGCgACUACAuCcGCGa -3'
miRNA:   3'- agUCGGGUGGCGgUGGUGUuGuCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.