Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 15881 | 0.66 | 0.506348 |
|
Target: 5'- gGCaGCgGCCAUagccAGCAuGUCCCGCc -3' miRNA: 3'- aCGaCGgUGGUAga--UCGU-CAGGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 13010 | 0.66 | 0.494447 |
|
Target: 5'- cGCUGgggguggcccccuCCugCAUCaGGaaCAGUCCCACa -3' miRNA: 3'- aCGAC-------------GGugGUAGaUC--GUCAGGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 17233 | 0.66 | 0.453343 |
|
Target: 5'- cGCcGCCGCCGgugggggUGGCGGcgcaUCCCGCUu -3' miRNA: 3'- aCGaCGGUGGUag-----AUCGUC----AGGGUGA- -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 12665 | 0.67 | 0.423025 |
|
Target: 5'- gGCUcGaCACCGUCgcGCGGUCCC-Cg -3' miRNA: 3'- aCGA-CgGUGGUAGauCGUCAGGGuGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 13545 | 0.68 | 0.357269 |
|
Target: 5'- cGCaggggGCCACCAgccggGGCAGUgCCGCc -3' miRNA: 3'- aCGa----CGGUGGUaga--UCGUCAgGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 5148 | 0.68 | 0.348479 |
|
Target: 5'- cGCUGgacgcCCAUCGUCUGGCGcccuacUCCCGCa -3' miRNA: 3'- aCGAC-----GGUGGUAGAUCGUc-----AGGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 15922 | 0.68 | 0.348479 |
|
Target: 5'- cGCUGCCGCCGcCgUGGCcgcgcgucuccgAGUCCUGCc -3' miRNA: 3'- aCGACGGUGGUaG-AUCG------------UCAGGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 24526 | 0.68 | 0.348479 |
|
Target: 5'- gUGCUGCaCACCAccCUGcGCGGggaggCCCGCc -3' miRNA: 3'- -ACGACG-GUGGUa-GAU-CGUCa----GGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 22357 | 0.7 | 0.29133 |
|
Target: 5'- gUGC-GCUACCAaccaguuuUCUAGCaAGUCCUGCg -3' miRNA: 3'- -ACGaCGGUGGU--------AGAUCG-UCAGGGUGa -5' |
|||||||
| 11904 | 5' | -56.3 | NC_003266.2 | + | 29840 | 1.08 | 0.000394 |
|
Target: 5'- uUGCUGCCACCAUCUAGCAGUCCCACUg -3' miRNA: 3'- -ACGACGGUGGUAGAUCGUCAGGGUGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home