Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11905 | 3' | -54.4 | NC_003266.2 | + | 4217 | 0.66 | 0.641972 |
Target: 5'- ---cUGGgaGGGAUGCAUgCGGGGgGa -3' miRNA: 3'- ugaaACCaaCCUUGCGUGgGCUCCgC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 10909 | 0.67 | 0.562355 |
Target: 5'- gGCgguagUGGcUGGAAguugcUGCugCUGGGGCGg -3' miRNA: 3'- -UGaa---ACCaACCUU-----GCGugGGCUCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 10916 | 0.69 | 0.433985 |
Target: 5'- gGCUUUGGaagaGGGcgaggggcugGCGCGCCUGgGGGCGu -3' miRNA: 3'- -UGAAACCaa--CCU----------UGCGUGGGC-UCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 13373 | 0.67 | 0.573622 |
Target: 5'- ---cUGGgcaGGAucACGCGCCCGcgcuugcuGGGCGa -3' miRNA: 3'- ugaaACCaa-CCU--UGCGUGGGC--------UCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 14462 | 0.66 | 0.612261 |
Target: 5'- gGCUg-GGUUGGGAcccCGUgaccgagcuggucauGCCCGGGGUGu -3' miRNA: 3'- -UGAaaCCAACCUU---GCG---------------UGGGCUCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 15443 | 0.7 | 0.384747 |
Target: 5'- ----cGGUUGGGgucugcGCGCGCCCagcaagauguacgGAGGCGc -3' miRNA: 3'- ugaaaCCAACCU------UGCGUGGG-------------CUCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 17087 | 0.74 | 0.243077 |
Target: 5'- uGCUcgGG-UGGuAGCGCGCCCGcGGCa -3' miRNA: 3'- -UGAaaCCaACC-UUGCGUGGGCuCCGc -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 21611 | 0.67 | 0.551149 |
Target: 5'- ---cUGGUUGcGGCGCaggguagguuccACCUGGGGCGa -3' miRNA: 3'- ugaaACCAACcUUGCG------------UGGGCUCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 22307 | 0.73 | 0.256474 |
Target: 5'- ---cUGGUUGGuAGCGCACCC--GGCGu -3' miRNA: 3'- ugaaACCAACC-UUGCGUGGGcuCCGC- -5' |
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11905 | 3' | -54.4 | NC_003266.2 | + | 30764 | 1.08 | 0.000834 |
Target: 5'- gACUUUGGUUGGAACGCACCCGAGGCGc -3' miRNA: 3'- -UGAAACCAACCUUGCGUGGGCUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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