Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11905 | 5' | -58.2 | NC_003266.2 | + | 24509 | 0.69 | 0.301117 |
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Target: 5'- aCCGCCUGGggCagaaCGugcuGCACACCACCcuGCg -3' miRNA: 3'- gGGCGGACUa-Gg---GC----UGUGUGGUGG--UG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 34030 | 0.69 | 0.293662 |
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Target: 5'- gCUGCCUGAUUgCGAUAC-CCuguCCAUg -3' miRNA: 3'- gGGCGGACUAGgGCUGUGuGGu--GGUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 8528 | 0.7 | 0.272164 |
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Target: 5'- aCCUGCCcGcgCgCGGCGCcgacgugccccuGCCACCACu -3' miRNA: 3'- -GGGCGGaCuaGgGCUGUG------------UGGUGGUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 19384 | 0.7 | 0.24549 |
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Target: 5'- aCCGCCUGAUUCC-ACAUACUgaaauACCGg -3' miRNA: 3'- gGGCGGACUAGGGcUGUGUGG-----UGGUg -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 8807 | 0.7 | 0.24549 |
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Target: 5'- gCCCGCCUcGUUCCaGACGCggcuguaaACCACgGCg -3' miRNA: 3'- -GGGCGGAcUAGGG-CUGUG--------UGGUGgUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 8473 | 0.71 | 0.209585 |
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Target: 5'- gCCGCCccuaccgCCCGGCGCgcguccucGCCGCCGCu -3' miRNA: 3'- gGGCGGacua---GGGCUGUG--------UGGUGGUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 17250 | 0.72 | 0.188239 |
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Target: 5'- aCCGCUUGcugaUGGCGCGCCGCCGCc -3' miRNA: 3'- gGGCGGACuaggGCUGUGUGGUGGUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 27588 | 0.74 | 0.143072 |
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Target: 5'- uUCCaCCUGAUCCCGA-AUACCACCu- -3' miRNA: 3'- -GGGcGGACUAGGGCUgUGUGGUGGug -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 17232 | 0.76 | 0.091033 |
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Target: 5'- gCCCGCgCUGAUCCCcau-CAUCGCCGCg -3' miRNA: 3'- -GGGCG-GACUAGGGcuguGUGGUGGUG- -5' |
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| 11905 | 5' | -58.2 | NC_003266.2 | + | 30798 | 1.11 | 0.00022 |
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Target: 5'- uCCCGCCUGAUCCCGACACACCACCACa -3' miRNA: 3'- -GGGCGGACUAGGGCUGUGUGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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