Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11906 | 3' | -58.9 | NC_003266.2 | + | 4442 | 0.66 | 0.392041 |
Target: 5'- aAUGGCUa--UGGGCccGUGGGCGGCgGCu -3' miRNA: 3'- -UGCUGGaggACCUG--UACCUGCCGgCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 5178 | 0.67 | 0.348462 |
Target: 5'- uGCGACC-CUggaaGGACc-GGACccuGGCCGCg -3' miRNA: 3'- -UGCUGGaGGa---CCUGuaCCUG---CCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 6393 | 0.66 | 0.410438 |
Target: 5'- ---cCCUUCUGcucgcGCAaGGGCGGCCGCc -3' miRNA: 3'- ugcuGGAGGACc----UGUaCCUGCCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 8805 | 0.71 | 0.198791 |
Target: 5'- aACGACCUCgC-GGccacCGUGGAgcgcgcCGGCCGCg -3' miRNA: 3'- -UGCUGGAG-GaCCu---GUACCU------GCCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 9385 | 0.68 | 0.324022 |
Target: 5'- uGCGACC-CCgcgaGGAC--GGGCGcGCCGUc -3' miRNA: 3'- -UGCUGGaGGa---CCUGuaCCUGC-CGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 9420 | 0.71 | 0.204173 |
Target: 5'- -gGGCCaCCUGGAgAUGcGCGGCgGCg -3' miRNA: 3'- ugCUGGaGGACCUgUACcUGCCGgCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 11669 | 0.66 | 0.426491 |
Target: 5'- aGCGACgaUCUGGGgGUguaccgcaacgacaGGAUGcGCCGCg -3' miRNA: 3'- -UGCUGgaGGACCUgUA--------------CCUGC-CGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 12169 | 0.66 | 0.409506 |
Target: 5'- cACGGCCUCCaGGAUGgccgagagccgguUGGccuGgGGCUGCu -3' miRNA: 3'- -UGCUGGAGGaCCUGU-------------ACC---UgCCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 13051 | 0.68 | 0.324022 |
Target: 5'- -gGACUaCCU--GCAUcGGGCGGCCGCc -3' miRNA: 3'- ugCUGGaGGAccUGUA-CCUGCCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 13259 | 0.68 | 0.324022 |
Target: 5'- aGCGACCggcgcccgUCCUcGGCGcUGucCGGCCGCa -3' miRNA: 3'- -UGCUGG--------AGGAcCUGU-ACcuGCCGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 16362 | 0.66 | 0.439016 |
Target: 5'- gGCGGCCgagcgCCUGGGCGaguuUGcuuACGGCaagCGCa -3' miRNA: 3'- -UGCUGGa----GGACCUGU----ACc--UGCCG---GCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 17861 | 0.68 | 0.308451 |
Target: 5'- aGCGucuCCUCCgcgucgGGACggGGACGcuuGUCGCc -3' miRNA: 3'- -UGCu--GGAGGa-----CCUGuaCCUGC---CGGCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 18229 | 0.66 | 0.410438 |
Target: 5'- ---uCCUUCUGGACAgcaGCGGCgGCg -3' miRNA: 3'- ugcuGGAGGACCUGUaccUGCCGgCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 19904 | 0.66 | 0.429363 |
Target: 5'- -gGGCa-CCUGGAUGUGGAaUGGCaCGUa -3' miRNA: 3'- ugCUGgaGGACCUGUACCU-GCCG-GCG- -5' |
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11906 | 3' | -58.9 | NC_003266.2 | + | 30983 | 1.11 | 0.000183 |
Target: 5'- aACGACCUCCUGGACAUGGACGGCCGCg -3' miRNA: 3'- -UGCUGGAGGACCUGUACCUGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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