miRNA: 3'- -GUcGCAGA--GCGGGuUGAGG-CGUaAGC- -5'
miRNA: 3'- gUCGCagaGCG-------GGUUGAGGCGuaAGc -5'
miRNA: 3'- gUCGCaGAGCGGGUugaGGCGUaa-GC- -5'
miRNA: 3'- guCGCAGA--------------GCGGG------UUGAGGCgUAAGC- -5'
miRNA: 3'- -GUCGCAGAGCGGGUUGAGGCGUAAGC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11906 | 5' | -55.3 | NC_003266.2 | + | 5138 | 0.66 | 0.617749 |
|
Target: 5'- cCAuCGUCUggCGCCCuACUCCcGCAgUCGc -3' miRNA: 3'- -GUcGCAGA--GCGGGuUGAGG-CGUaAGC- -5' |
|||||||
| 11906 | 5' | -55.3 | NC_003266.2 | + | 24403 | 0.66 | 0.616616 |
|
Target: 5'- aAGCGg--CGCagacacuCCAGCUCCGCggUCa -3' miRNA: 3'- gUCGCagaGCG-------GGUUGAGGCGuaAGc -5' |
|||||||
| 11906 | 5' | -55.3 | NC_003266.2 | + | 9862 | 0.67 | 0.55034 |
|
Target: 5'- uGGCG-CUCGUCCAg--CCGCAgcgCGg -3' miRNA: 3'- gUCGCaGAGCGGGUugaGGCGUaa-GC- -5' |
|||||||
| 11906 | 5' | -55.3 | NC_003266.2 | + | 20221 | 0.7 | 0.347822 |
|
Target: 5'- -cGCGUCUcaagaccaaagagaCGCCCucgcugGGCUCCGgGUUCGa -3' miRNA: 3'- guCGCAGA--------------GCGGG------UUGAGGCgUAAGC- -5' |
|||||||
| 11906 | 5' | -55.3 | NC_003266.2 | + | 31018 | 1.08 | 0.000729 |
|
Target: 5'- gCAGCGUCUCGCCCAACUCCGCAUUCGc -3' miRNA: 3'- -GUCGCAGAGCGGGUUGAGGCGUAAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home