Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 13811 | 0.66 | 0.548827 |
|
Target: 5'- aCGCAcgcUGGUcGCC-AUGGCCUuggUGAGUAc -3' miRNA: 3'- -GCGU---ACUA-CGGuUACCGGG---ACUCGUa -5' |
|||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 25314 | 0.66 | 0.548827 |
|
Target: 5'- aCGCAg---GCCGAcagcucGGCCUUGGGCGg -3' miRNA: 3'- -GCGUacuaCGGUUa-----CCGGGACUCGUa -5' |
|||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 27159 | 0.66 | 0.526276 |
|
Target: 5'- cCGCAcuccgUGG-GCCg--GGCCCUGAGgGUg -3' miRNA: 3'- -GCGU-----ACUaCGGuuaCCGGGACUCgUA- -5' |
|||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 12296 | 0.67 | 0.457838 |
|
Target: 5'- cCGCAUGGUGaCCGacgugcgcgaagccGUGGCCCaGcGCGa -3' miRNA: 3'- -GCGUACUAC-GGU--------------UACCGGGaCuCGUa -5' |
|||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 21142 | 0.68 | 0.41001 |
|
Target: 5'- uCGCG-GAUG---AUGGCCCUGAGCu- -3' miRNA: 3'- -GCGUaCUACgguUACCGGGACUCGua -5' |
|||||||
| 11908 | 5' | -55.3 | NC_003266.2 | + | 33375 | 1.05 | 0.000758 |
|
Target: 5'- gCGCAUGAUGCCAAUGGCCCUGAGCAUc -3' miRNA: 3'- -GCGUACUACGGUUACCGGGACUCGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home