miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 22066 0.68 0.512044
Target:  5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3'
miRNA:   3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22826 0.68 0.480627
Target:  5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3'
miRNA:   3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9137 0.68 0.480627
Target:  5'- -cAGCGCCUGGgcuaCGuCAGCGugcaggccuuCGCCGAGUc -3'
miRNA:   3'- caUUGCGGACC----GC-GUUGU----------GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31565 0.68 0.470012
Target:  5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3'
miRNA:   3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 31032 0.68 0.470012
Target:  5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3'
miRNA:   3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 9590 0.69 0.434852
Target:  5'- ---cCGaCCUGGaccaacagcggcaGCAGCuGCGCCAGGCg -3'
miRNA:   3'- cauuGC-GGACCg------------CGUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 27469 0.69 0.418841
Target:  5'- ---gUGCCggUGGC-CAGCcagGCGCCGAGCa -3'
miRNA:   3'- cauuGCGG--ACCGcGUUG---UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16745 0.69 0.428806
Target:  5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3'
miRNA:   3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12871 0.69 0.428806
Target:  5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3'
miRNA:   3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 5610 0.69 0.418841
Target:  5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3'
miRNA:   3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9461 0.69 0.409018
Target:  5'- ---uCGaCCUGGCGCAgGCcCGCCuGGCc -3'
miRNA:   3'- cauuGC-GGACCGCGU-UGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 14057 0.69 0.428806
Target:  5'- ----gGCCUGGC-CGGCGCcgaggcccuggGCCAGGCc -3'
miRNA:   3'- cauugCGGACCGcGUUGUG-----------CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5703 0.69 0.428806
Target:  5'- -cGGCGCCgccGGCGCGGCuguuguCGCUgcggucggccucGAGCa -3'
miRNA:   3'- caUUGCGGa--CCGCGUUGu-----GCGG------------UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12714 0.69 0.442989
Target:  5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3'
miRNA:   3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 4655 0.69 0.449148
Target:  5'- gGUGG-GCUUGGcCGUuguACAgGCCGAGCa -3'
miRNA:   3'- -CAUUgCGGACC-GCGu--UGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 3229 0.69 0.449148
Target:  5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3'
miRNA:   3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 18198 0.69 0.43891
Target:  5'- cGgcACGCCgaggauGCGCGGuacCACGCcCAAGCg -3'
miRNA:   3'- -CauUGCGGac----CGCGUU---GUGCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13882 0.69 0.43891
Target:  5'- aUGGCGCC-GGCGCucuuGCccagguCGCCcAGCa -3'
miRNA:   3'- cAUUGCGGaCCGCGu---UGu-----GCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 22976 0.69 0.408043
Target:  5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3'
miRNA:   3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.