Results 101 - 120 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 27845 | 0.71 | 0.335838 |
Target: 5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3' miRNA: 3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 28979 | 0.72 | 0.27929 |
Target: 5'- -gGGCGCC-GGCGUAAUcgccggcaucgauGCGCCAgAGCa -3' miRNA: 3'- caUUGCGGaCCGCGUUG-------------UGCGGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 7006 | 0.72 | 0.28753 |
Target: 5'- -cGAUGCCgUGGUGCAGCAgCGCgauGGCg -3' miRNA: 3'- caUUGCGG-ACCGCGUUGU-GCGgu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 32597 | 0.72 | 0.310972 |
Target: 5'- gGUGGCGCCUccGGCGguACcggGCGgCAAGUu -3' miRNA: 3'- -CAUUGCGGA--CCGCguUG---UGCgGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21761 | 0.72 | 0.310972 |
Target: 5'- -gAAUGaCCUGGCGCuucACACGCUccGGCc -3' miRNA: 3'- caUUGC-GGACCGCGu--UGUGCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26144 | 0.72 | 0.28753 |
Target: 5'- -cAACaCCUGGCGCAgaaggcucacgcGCugGCCucGGCg -3' miRNA: 3'- caUUGcGGACCGCGU------------UGugCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14302 | 0.72 | 0.280031 |
Target: 5'- -gGACGCCggcgaaGGCGCggUACaucagGCCGAGUg -3' miRNA: 3'- caUUGCGGa-----CCGCGuuGUG-----CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16288 | 0.72 | 0.271963 |
Target: 5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3' miRNA: 3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 31150 | 0.72 | 0.295186 |
Target: 5'- ---cCGCCUGGCGCccaGCGCCcucuGGUg -3' miRNA: 3'- cauuGCGGACCGCGuugUGCGGu---UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15324 | 0.72 | 0.272689 |
Target: 5'- -cGACGCC-GGCggaguacuucaGCGAguCGCCGAGCa -3' miRNA: 3'- caUUGCGGaCCG-----------CGUUguGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26112 | 0.72 | 0.28753 |
Target: 5'- ---cCGCUUGGCcacucCGACGCGCUggGCa -3' miRNA: 3'- cauuGCGGACCGc----GUUGUGCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 1761 | 0.72 | 0.272689 |
Target: 5'- -cAGCGCC-GuGCGCAGCGCGUCGAuGUc -3' miRNA: 3'- caUUGCGGaC-CGCGUUGUGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9047 | 0.72 | 0.272689 |
Target: 5'- -cAGCGCCUGGCG-AACGCucGCCAGa- -3' miRNA: 3'- caUUGCGGACCGCgUUGUG--CGGUUcg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 29235 | 0.73 | 0.251588 |
Target: 5'- -aAGCGCCUgcucGGCGUGGC-CGCCGGuGCg -3' miRNA: 3'- caUUGCGGA----CCGCGUUGuGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 31591 | 0.73 | 0.251588 |
Target: 5'- -gAGCGCCaGGCGCGGauccaGCGCUAccagGGCg -3' miRNA: 3'- caUUGCGGaCCGCGUUg----UGCGGU----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15884 | 0.74 | 0.21943 |
Target: 5'- --uGCGCCUGGCuGUugAugGCGCCAuuGGCc -3' miRNA: 3'- cauUGCGGACCG-CG--UugUGCGGU--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30261 | 0.74 | 0.231851 |
Target: 5'- --uGCGCCUGGUGguGC-CGCUguccGAGCa -3' miRNA: 3'- cauUGCGGACCGCguUGuGCGG----UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23174 | 0.75 | 0.19629 |
Target: 5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3' miRNA: 3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 3943 | 0.75 | 0.175309 |
Target: 5'- --cGCGCCUGGCGCucaaGCuGCCGAuGCa -3' miRNA: 3'- cauUGCGGACCGCGuug-UG-CGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16627 | 0.75 | 0.190847 |
Target: 5'- -gAGCGCgaUUGGCGCGAC-CGCCA-GCu -3' miRNA: 3'- caUUGCG--GACCGCGUUGuGCGGUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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