Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 16745 | 0.69 | 0.428806 |
Target: 5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3' miRNA: 3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12871 | 0.69 | 0.428806 |
Target: 5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3' miRNA: 3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22976 | 0.69 | 0.408043 |
Target: 5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3' miRNA: 3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12714 | 0.69 | 0.442989 |
Target: 5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3' miRNA: 3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5610 | 0.69 | 0.418841 |
Target: 5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3' miRNA: 3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 31032 | 0.68 | 0.470012 |
Target: 5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3' miRNA: 3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 6261 | 0.68 | 0.47956 |
Target: 5'- --cGCGCCgcugccGGUgaagaucgcaccgGCGGcCACGCCGAGCa -3' miRNA: 3'- cauUGCGGa-----CCG-------------CGUU-GUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8707 | 0.68 | 0.480627 |
Target: 5'- -cGACGCCccUGGCGU-ACAgGUCGAGg -3' miRNA: 3'- caUUGCGG--ACCGCGuUGUgCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 32161 | 0.68 | 0.481695 |
Target: 5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3' miRNA: 3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18779 | 0.68 | 0.502199 |
Target: 5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3' miRNA: 3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26290 | 0.68 | 0.513143 |
Target: 5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3' miRNA: 3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 31565 | 0.68 | 0.470012 |
Target: 5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3' miRNA: 3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22826 | 0.68 | 0.480627 |
Target: 5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3' miRNA: 3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 20459 | 0.68 | 0.513143 |
Target: 5'- -cAGCGC--GGCGCGaucuucaaggACAuCGCCGGGCa -3' miRNA: 3'- caUUGCGgaCCGCGU----------UGU-GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30661 | 0.68 | 0.513143 |
Target: 5'- ----aGCCUgaccGGCGCGGCaACGCCGGaacuGCa -3' miRNA: 3'- cauugCGGA----CCGCGUUG-UGCGGUU----CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 6350 | 0.68 | 0.513143 |
Target: 5'- -gAACGCCuaUGaGCuGCAGCuCGCCcAGCu -3' miRNA: 3'- caUUGCGG--AC-CG-CGUUGuGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22066 | 0.68 | 0.512044 |
Target: 5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3' miRNA: 3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9137 | 0.68 | 0.480627 |
Target: 5'- -cAGCGCCUGGgcuaCGuCAGCGugcaggccuuCGCCGAGUc -3' miRNA: 3'- caUUGCGGACC----GC-GUUGU----------GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30012 | 0.68 | 0.513143 |
Target: 5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3' miRNA: 3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 2546 | 0.68 | 0.513143 |
Target: 5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3' miRNA: 3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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