Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 21636 | 0.67 | 0.524183 |
Target: 5'- -gGGCGaCCUGG-GCAAgaGCGCC-GGCg -3' miRNA: 3'- caUUGC-GGACCgCGUUg-UGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8049 | 0.67 | 0.535313 |
Target: 5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3' miRNA: 3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14018 | 0.67 | 0.535313 |
Target: 5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3' miRNA: 3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21474 | 0.67 | 0.535313 |
Target: 5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3' miRNA: 3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10356 | 0.67 | 0.546525 |
Target: 5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3' miRNA: 3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9362 | 0.67 | 0.556679 |
Target: 5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3' miRNA: 3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8412 | 0.67 | 0.524183 |
Target: 5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3' miRNA: 3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15514 | 0.67 | 0.535313 |
Target: 5'- --cAUGCC-GG-GCAugGCGCCGAGg -3' miRNA: 3'- cauUGCGGaCCgCGUugUGCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 17183 | 0.67 | 0.579425 |
Target: 5'- -cAACGCCgccacugUGGUGguGCGggugaaGCCGGGCg -3' miRNA: 3'- caUUGCGG-------ACCGCguUGUg-----CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10798 | 0.67 | 0.585145 |
Target: 5'- ----aGCCUGGCGCucccgaagucagcuACGCGC--AGCg -3' miRNA: 3'- cauugCGGACCGCGu-------------UGUGCGguUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8363 | 0.67 | 0.577141 |
Target: 5'- --uGCGCCUGGUcugcuaccagcgcuGCGGCGCccgcuuccGCCGcAGCg -3' miRNA: 3'- cauUGCGGACCG--------------CGUUGUG--------CGGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30332 | 0.67 | 0.569161 |
Target: 5'- -gAGCGCCaGGaCGCcgucaACGCCGAcGCg -3' miRNA: 3'- caUUGCGGaCC-GCGuug--UGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 29829 | 0.67 | 0.569161 |
Target: 5'- --cGCGCCggcGGCGC----CGCCAAGUc -3' miRNA: 3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 32382 | 0.67 | 0.569161 |
Target: 5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3' miRNA: 3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26009 | 0.67 | 0.55781 |
Target: 5'- ----gGCCUGGCGgGAaa-GCUggGCg -3' miRNA: 3'- cauugCGGACCGCgUUgugCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26464 | 0.67 | 0.546525 |
Target: 5'- gGUAucguCGaUCUGGCG-AGCGuuCGCCAGGCg -3' miRNA: 3'- -CAUu---GC-GGACCGCgUUGU--GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5266 | 0.67 | 0.546525 |
Target: 5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3' miRNA: 3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 13615 | 0.67 | 0.569161 |
Target: 5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3' miRNA: 3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23282 | 0.67 | 0.535313 |
Target: 5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3' miRNA: 3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21296 | 0.67 | 0.535313 |
Target: 5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3' miRNA: 3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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