miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 18198 0.69 0.43891
Target:  5'- cGgcACGCCgaggauGCGCGGuacCACGCcCAAGCg -3'
miRNA:   3'- -CauUGCGGac----CGCGUU---GUGCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 12714 0.69 0.442989
Target:  5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3'
miRNA:   3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 4655 0.69 0.449148
Target:  5'- gGUGG-GCUUGGcCGUuguACAgGCCGAGCa -3'
miRNA:   3'- -CAUUgCGGACC-GCGu--UGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 3229 0.69 0.449148
Target:  5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3'
miRNA:   3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31032 0.68 0.470012
Target:  5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3'
miRNA:   3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 31565 0.68 0.470012
Target:  5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3'
miRNA:   3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 6261 0.68 0.47956
Target:  5'- --cGCGCCgcugccGGUgaagaucgcaccgGCGGcCACGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-----CCG-------------CGUU-GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 8707 0.68 0.480627
Target:  5'- -cGACGCCccUGGCGU-ACAgGUCGAGg -3'
miRNA:   3'- caUUGCGG--ACCGCGuUGUgCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 9137 0.68 0.480627
Target:  5'- -cAGCGCCUGGgcuaCGuCAGCGugcaggccuuCGCCGAGUc -3'
miRNA:   3'- caUUGCGGACC----GC-GUUGU----------GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22826 0.68 0.480627
Target:  5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3'
miRNA:   3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 32161 0.68 0.481695
Target:  5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3'
miRNA:   3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 18779 0.68 0.502199
Target:  5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3'
miRNA:   3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 22066 0.68 0.512044
Target:  5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3'
miRNA:   3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 20459 0.68 0.513143
Target:  5'- -cAGCGC--GGCGCGaucuucaaggACAuCGCCGGGCa -3'
miRNA:   3'- caUUGCGgaCCGCGU----------UGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30661 0.68 0.513143
Target:  5'- ----aGCCUgaccGGCGCGGCaACGCCGGaacuGCa -3'
miRNA:   3'- cauugCGGA----CCGCGUUG-UGCGGUU----CG- -5'
11910 5' -54.3 NC_003278.1 + 6350 0.68 0.513143
Target:  5'- -gAACGCCuaUGaGCuGCAGCuCGCCcAGCu -3'
miRNA:   3'- caUUGCGG--AC-CG-CGUUGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 2546 0.68 0.513143
Target:  5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3'
miRNA:   3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 26290 0.68 0.513143
Target:  5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3'
miRNA:   3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.