Results 121 - 130 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 12002 | 0.66 | 0.626567 |
Target: 5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3' miRNA: 3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 3225 | 0.66 | 0.626567 |
Target: 5'- gGUGACGaUCUGGCGCcaGAUGCGguCCucGCa -3' miRNA: 3'- -CAUUGC-GGACCGCG--UUGUGC--GGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 4529 | 0.66 | 0.638108 |
Target: 5'- aGUGG-GCCUGGC-CGGCuggugaguucgGCGCCuauGGCg -3' miRNA: 3'- -CAUUgCGGACCGcGUUG-----------UGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19692 | 0.66 | 0.638108 |
Target: 5'- -gAGCGCCUGacccaagccCGCAACACcuacaGCCGcGGCa -3' miRNA: 3'- caUUGCGGACc--------GCGUUGUG-----CGGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21866 | 0.66 | 0.638108 |
Target: 5'- cGgcGCGCCUGcGCGCc---CGCCu-GCa -3' miRNA: 3'- -CauUGCGGAC-CGCGuuguGCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 4164 | 0.66 | 0.638108 |
Target: 5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3' miRNA: 3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10175 | 0.66 | 0.638108 |
Target: 5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3' miRNA: 3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12940 | 0.66 | 0.638108 |
Target: 5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3' miRNA: 3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22124 | 0.66 | 0.638108 |
Target: 5'- -cGACGCUgaUGGaCGUAgGC-CGUCAAGCg -3' miRNA: 3'- caUUGCGG--ACC-GCGU-UGuGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14753 | 0.66 | 0.638108 |
Target: 5'- ---cCGCC-GGCaGCAACccgaccACGCUggGCg -3' miRNA: 3'- cauuGCGGaCCG-CGUUG------UGCGGuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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