miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 17978 0.69 0.418841
Target:  5'- ---gUGCCUGG-GCAacaGCugGCgCAGGCa -3'
miRNA:   3'- cauuGCGGACCgCGU---UGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 18198 0.69 0.43891
Target:  5'- cGgcACGCCgaggauGCGCGGuacCACGCcCAAGCg -3'
miRNA:   3'- -CauUGCGGac----CGCGUU---GUGCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 18523 0.66 0.615033
Target:  5'- gGUGACGCCcagcccGGCG-AAgACaCCGAGCa -3'
miRNA:   3'- -CAUUGCGGa-----CCGCgUUgUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 18779 0.68 0.502199
Target:  5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3'
miRNA:   3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 19150 0.67 0.524183
Target:  5'- -gAugGagUGGCGCgAACGCGcCCGGGUa -3'
miRNA:   3'- caUugCggACCGCG-UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 19308 0.71 0.353206
Target:  5'- -gAGCGCCUGaaGCAGCucaACGCUcAGCa -3'
miRNA:   3'- caUUGCGGACcgCGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 19391 0.66 0.603514
Target:  5'- --cGCGCUggccGCGCAACAgGCaCGGGUg -3'
miRNA:   3'- cauUGCGGac--CGCGUUGUgCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 19649 0.71 0.352323
Target:  5'- -cAACaGCCaGGCGCAGCGCuuacgcaaccucaGCCAgcAGCa -3'
miRNA:   3'- caUUG-CGGaCCGCGUUGUG-------------CGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 19692 0.66 0.638108
Target:  5'- -gAGCGCCUGacccaagccCGCAACACcuacaGCCGcGGCa -3'
miRNA:   3'- caUUGCGGACc--------GCGUUGUG-----CGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 20332 0.66 0.603514
Target:  5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3'
miRNA:   3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 20459 0.68 0.513143
Target:  5'- -cAGCGC--GGCGCGaucuucaaggACAuCGCCGGGCa -3'
miRNA:   3'- caUUGCGgaCCGCGU----------UGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21056 0.7 0.39934
Target:  5'- ---cCGCCgucgUGGCGguGCugGCC-GGCg -3'
miRNA:   3'- cauuGCGG----ACCGCguUGugCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21296 0.67 0.535313
Target:  5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3'
miRNA:   3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21474 0.67 0.535313
Target:  5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3'
miRNA:   3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21497 0.67 0.535313
Target:  5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21520 0.66 0.603514
Target:  5'- -cAAgGCCUGGUcaGCGcggGC-CGUCAGGCu -3'
miRNA:   3'- caUUgCGGACCG--CGU---UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21636 0.67 0.524183
Target:  5'- -gGGCGaCCUGG-GCAAgaGCGCC-GGCg -3'
miRNA:   3'- caUUGC-GGACCgCGUUg-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21761 0.72 0.310972
Target:  5'- -gAAUGaCCUGGCGCuucACACGCUccGGCc -3'
miRNA:   3'- caUUGC-GGACCGCGu--UGUGCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 21866 0.66 0.638108
Target:  5'- cGgcGCGCCUGcGCGCc---CGCCu-GCa -3'
miRNA:   3'- -CauUGCGGAC-CGCGuuguGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21904 0.66 0.592023
Target:  5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3'
miRNA:   3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.