miRNA display CGI


Results 81 - 100 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 22066 0.68 0.512044
Target:  5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3'
miRNA:   3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22124 0.66 0.638108
Target:  5'- -cGACGCUgaUGGaCGUAgGC-CGUCAAGCg -3'
miRNA:   3'- caUUGCGG--ACC-GCGU-UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22608 0.67 0.569161
Target:  5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3'
miRNA:   3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 22826 0.68 0.480627
Target:  5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3'
miRNA:   3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22976 0.69 0.408043
Target:  5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3'
miRNA:   3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 23174 0.75 0.19629
Target:  5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3'
miRNA:   3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 23282 0.67 0.535313
Target:  5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3'
miRNA:   3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 23637 0.66 0.603514
Target:  5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3'
miRNA:   3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5'
11910 5' -54.3 NC_003278.1 + 24713 0.71 0.335838
Target:  5'- -aGACGCUgcGCGUAGCugacuucgggaGCGCCAGGCu -3'
miRNA:   3'- caUUGCGGacCGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 24817 0.7 0.39838
Target:  5'- cGUGAuCGCCUgGGCGUcgcccuuGGCGCGCagauAGCg -3'
miRNA:   3'- -CAUU-GCGGA-CCGCG-------UUGUGCGgu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 25274 0.67 0.580569
Target:  5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3'
miRNA:   3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 25917 0.79 0.094083
Target:  5'- -cAGCGCCUGGCGCAGCugcUGCCGcuguuggucaggucGGCc -3'
miRNA:   3'- caUUGCGGACCGCGUUGu--GCGGU--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 26009 0.67 0.55781
Target:  5'- ----gGCCUGGCGgGAaa-GCUggGCg -3'
miRNA:   3'- cauugCGGACCGCgUUgugCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 26112 0.72 0.28753
Target:  5'- ---cCGCUUGGCcacucCGACGCGCUggGCa -3'
miRNA:   3'- cauuGCGGACCGc----GUUGUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 26144 0.72 0.28753
Target:  5'- -cAACaCCUGGCGCAgaaggcucacgcGCugGCCucGGCg -3'
miRNA:   3'- caUUGcGGACCGCGU------------UGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 26290 0.68 0.513143
Target:  5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3'
miRNA:   3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26464 0.67 0.546525
Target:  5'- gGUAucguCGaUCUGGCG-AGCGuuCGCCAGGCg -3'
miRNA:   3'- -CAUu---GC-GGACCGCgUUGU--GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26945 0.66 0.615033
Target:  5'- --cACaCCUGGcCGCAcgACAUGCCGaagucGGCg -3'
miRNA:   3'- cauUGcGGACC-GCGU--UGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 27166 0.71 0.327391
Target:  5'- gGUAGCaGaCCaGGCGCAGCGCGgCA-GCg -3'
miRNA:   3'- -CAUUG-C-GGaCCGCGUUGUGCgGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 27469 0.69 0.418841
Target:  5'- ---gUGCCggUGGC-CAGCcagGCGCCGAGCa -3'
miRNA:   3'- cauuGCGG--ACCGcGUUG---UGCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.